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Is there a site that takes a list of uniprot IDs/gene IDs as input and create radial phylogenetic tree?
phylogenetictree
18 months ago by Diwan ▴ 650
7
votes
7
replies
4.8k
views
7 follow
Is There Any Free Software To Create Nice Visual Of Ppi Networks Along With Cellular Components?
ipa ppi
updated 5.9 years ago by 12k • written 10.5 years ago by ▴ 650
4
votes
4
replies
4.2k
views
Is there way to do batchquery and obtain ATC codes for pubchem CIDs?
pubchem CID ATC codes
updated 6.9 years ago by 20 • written 8.5 years ago by ▴ 650
1
vote
1
reply
2.1k
views
How to obtain LINCS metadata/column annotations associated with LDS-1191?
LINCS LINCS metadata LDS1191
updated 6.9 years ago by • 0 • written 7.9 years ago by ▴ 650
0
votes
0
replies
1.0k
views
How to introduce/explain co-expression to diverse audience?
co-expression
7.1 years ago by Diwan ▴ 650
1
vote
2
replies
2.8k
views
Can we predict/quantify transcription factor activation using gene expression data?
transcription factor gene expression TF activation
updated 7.2 years ago by 20 • written 7.8 years ago by ▴ 650
2
votes
2
replies
3.4k
views
What are the common approaches used in protein-protein interaction network analysis?
PPI biomarker protein-protein-interaction-analysis
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 650
2
votes
4
replies
3.4k
views
What other programs produce visually captivating GO enrichment pictures?
gene-ontology GO-enrichment
updated 2.1 years ago by 44k • written 9.1 years ago by ▴ 650
5
votes
3
replies
2.1k
views
How to show biological processes associated with a small list of genes?
GOterm biological-process
updated 2.1 years ago by 44k • written 9.0 years ago by ▴ 650
9
votes
4
replies
3.1k
views
Which journal do you frequently read/recommend for reviews/updates in computational biology/bioinformatics?
journal reviews computationalbiology
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 650
0
votes
0
replies
2.0k
views
What are the major research areas/trends in computational biomarker discovery?
biomarkers
updated 2.7 years ago by 44k • written 10.2 years ago by ▴ 650
5
votes
2
replies
4.5k
views
If there is low correlation between gene expression and protein levels, why are we still analyzing and extrapolating mRNA level to proteins?
mRNA-protein-levels expression mRNA-protein
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 650
1
vote
1
reply
5.8k
views
Why is log-intensity instead of log-ratio used to develop gene expression classifiers?
microarray-classifier log-intensity log-ratio
updated 2.9 years ago by 44k • written 10.3 years ago by ▴ 650
6
votes
3
replies
5.1k
views
Is there any open proteomics repository like GEO?
proteomics-db proteomics arrayexpress GEO
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 650
36
votes
6
replies
18k
views
6 follow
How Can We Get Tissue Specific Genes?
gene-expression
updated 10.5 years ago by 35k • written 10.8 years ago by ▴ 650
4
votes
1
reply
5.2k
views
How To Use Present/Absent Calls Based Filtering Of Probes?
affymetrix
10.6 years ago by Diwan ▴ 650
6
votes
4
replies
3.9k
views
How To Show A Ppi Subnetwork/Cluster Is Not Obtained By Random Chance?
ppi clustering random
updated 10.8 years ago by ★ 1.2k • written 10.8 years ago by ▴ 650
12
votes
5
replies
3.6k
views
What Tool/Package Would You Recommend For Clustering Large Gene Expression Data?
expression clustering
updated 10.9 years ago by ▴ 520 • written 10.9 years ago by ▴ 650
5
votes
2
replies
3.2k
views
Is There Any Paper That Compares/Combines Differentially Expressed Genes With Co-Expressed Genes?
differential expression overlap
updated 10.9 years ago by 8.3k • written 10.9 years ago by ▴ 650
4
votes
4
replies
4.3k
views
Is There Any Website To Get Cellular Location Information For A List Of Genes?
gene
updated 11.2 years ago by ★ 1.5k • written 11.2 years ago by ▴ 650
0
votes
0
replies
2.6k
views
How To Automatically Convert Ppi Subnetwork Into A Pathway?
pathway
11.2 years ago by Diwan ▴ 650
2
votes
3
replies
2.7k
views
How To Do Find Clusters Most Correlated With Phenotype?
clustering correlation
11.3 years ago by Diwan ▴ 650
6
votes
2
replies
7.0k
views
How To Get Entire Kegg Or Reactome Pathway Genes As One Interaction Network?
kegg network pathway
updated 11.3 years ago by ▴ 860 • written 11.4 years ago by ▴ 650
5
votes
4
replies
4.3k
views
How To Extract Highly Connected Subgraphs From A Gene Network Representation
cytoscape bioconductor
updated 11.5 years ago by ▴ 10 • written 11.5 years ago by ▴ 650
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