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2
votes
0
replies
7.4k
views
Answer:
A: Reading gene expression data from an Excel spreadsheet into a python dictionary
updated 4.7 years ago by
Ram
44k • written 10.3 years ago by
fbrundu
▴ 350
0
votes
0
replies
5.4k
views
Comment:
C: Which tool to use to run a PCA on a microarray dataset to select the most releva
updated 4.7 years ago by
Ram
44k • written 10.4 years ago by
fbrundu
▴ 350
1
vote
2
replies
1.6k
views
Is cnvkit coverage output split into non-overlapping segments?
cnvkit
coverage
exome
updated 6.8 years ago by
Eric T.
★ 2.8k • written 6.9 years ago by
fbrundu
▴ 350
1
vote
0
replies
1.6k
views
Answer:
A: Is cnvkit coverage output split into non-overlapping segments?
6.9 years ago by
fbrundu
▴ 350
1
vote
1
reply
13k
views
Comment:
C: Compute mean depth coverage for exome data with paired end, overlapping, feature
6.9 years ago by
fbrundu
▴ 350
21
votes
14
replies
13k
views
6 follow
Compute mean depth coverage for exome data with paired end, overlapping, features
coverage
bam
depth
exome
updated 22 months ago by
Kiran
▴ 80 • written 6.9 years ago by
fbrundu
▴ 350
0
votes
1
reply
13k
views
Comment:
C: Compute mean depth coverage for exome data with paired end, overlapping, feature
6.9 years ago by
fbrundu
▴ 350
0
votes
0
replies
2.0k
views
TruSeq Exome Kit bed file old version
bed
whole-exome-sequencing
updated 17 months ago by
Ram
44k • written 6.9 years ago by
fbrundu
▴ 350
1
vote
0
replies
2.4k
views
Comment:
C: CNVkit calling strategies with matched-normal tumor
6.9 years ago by
fbrundu
▴ 350
0
votes
1
reply
2.4k
views
Comment:
C: CNVkit calling strategies with matched-normal tumor
6.9 years ago by
fbrundu
▴ 350
3
votes
4
replies
2.4k
views
CNVkit calling strategies with matched-normal tumor
cnvkit
copy-number-variation
whole-exome
updated 6.9 years ago by
Kevin Blighe
88k • written 6.9 years ago by
fbrundu
▴ 350
1
vote
1
reply
2.2k
views
What is the control level of activation in Paradigm?
paradigm
gene-expression
pathway
mrna
updated 3.0 years ago by
Ram
44k • written 9.5 years ago by
fbrundu
▴ 350
7
votes
6
replies
9.6k
views
6 follow
How To Merge Two Microarrays Datasets?
microarray
merge
dataset
updated 22 months ago by
Ram
44k • written 11.2 years ago by
fbrundu
▴ 350
0
votes
0
replies
2.1k
views
Which data format for mRNA expression matrix is necessary to run pathway analysis with Paradigm?
gene-expression
pathway
paradigm
mrna
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
fbrundu
▴ 350
3
votes
1
reply
2.5k
views
How to aggregate multiple copy number variation profiles or select the best one for one sample
copy-number-variation
tcga
RNA-Seq
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
fbrundu
▴ 350
0
votes
0
replies
4.7k
views
Comment:
Comment: How to select genes before log2 ratio on a RNASeq gene expression matrix, based
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
fbrundu
▴ 350
0
votes
0
replies
4.7k
views
Comment:
Comment: How to select genes before log2 ratio on a RNASeq gene expression matrix, based
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
fbrundu
▴ 350
0
votes
1
reply
4.7k
views
Comment:
Comment: How to select genes before log2 ratio on a RNASeq gene expression matrix, based
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
fbrundu
▴ 350
6
votes
7
replies
4.7k
views
How to select genes before log2 ratio on a RNASeq gene expression matrix, based on signal median
log-ratio
expression
RNA-Seq
feature-selection
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
fbrundu
▴ 350
0
votes
1
reply
19k
views
Comment:
C: How to download a full matrix of gene expression of a TCGA dataset
10.2 years ago by
fbrundu
▴ 350
10
votes
6
replies
19k
views
How to download a full matrix of gene expression of a TCGA dataset
tcga
gene
expression
cancer
samples
updated 10.2 years ago by
Sebastian Boegel
▴ 520 • written 10.2 years ago by
fbrundu
▴ 350
2
votes
1
reply
4.6k
views
Is LOESS normalization done to each sample independently?
loess
normalization
microarray
regression
updated 10.3 years ago by
karl.stamm
4.1k • written 10.3 years ago by
fbrundu
▴ 350
0
votes
0
replies
4.1k
views
Comment:
C: How to test the robustness and the performance of a novel classification algorit
10.3 years ago by
fbrundu
▴ 350
4
votes
9
replies
4.1k
views
How to test the robustness and the performance of a novel classification algorithm for gene expression data
algorithm
robustness
performance
test
updated 10.3 years ago by
Christian
★ 3.0k • written 10.3 years ago by
fbrundu
▴ 350
0
votes
1
reply
4.1k
views
Comment:
C: How to test the robustness and the performance of a novel classification algorit
10.3 years ago by
fbrundu
▴ 350
0
votes
1
reply
4.1k
views
Comment:
C: How to test the robustness and the performance of a novel classification algorit
10.3 years ago by
fbrundu
▴ 350
0
votes
0
replies
4.1k
views
Comment:
C: How to test the robustness and the performance of a novel classification algorit
10.3 years ago by
fbrundu
▴ 350
0
votes
1
reply
1.5k
views
Have pathways a minimal significative size?
pathway
updated 17 months ago by
Ram
44k • written 10.3 years ago by
fbrundu
▴ 350
0
votes
2
replies
2.7k
views
Comment:
C: Are Gene Symbols case sensitive or insensitive?
10.4 years ago by
fbrundu
▴ 350
9
votes
5
replies
2.7k
views
Are Gene Symbols case sensitive or insensitive?
symbol
gene
updated 3.0 years ago by
Ram
44k • written 10.4 years ago by
fbrundu
▴ 350
0
votes
0
replies
5.4k
views
Comment:
C: Which tool to use to run a PCA on a microarray dataset to select the most releva
10.4 years ago by
fbrundu
▴ 350
0
votes
0
replies
5.4k
views
Comment:
C: Which tool to use to run a PCA on a microarray dataset to select the most releva
10.4 years ago by
fbrundu
▴ 350
0
votes
0
replies
5.4k
views
Comment:
C: Which tool to use to run a PCA on a microarray dataset to select the most releva
10.4 years ago by
fbrundu
▴ 350
10
votes
6
replies
5.4k
views
Which tool to use to run a PCA on a microarray dataset to select the most relevant features (preferably in Python)
pca
python
microarray
r
features
updated 3.0 years ago by
Ram
44k • written 10.4 years ago by
fbrundu
▴ 350
29
votes
10
replies
51k
views
How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
fastq
paired-end
illumina
updated 10.5 years ago by
Chris Fields
★ 2.2k • written 10.5 years ago by
fbrundu
▴ 350
0
votes
1
reply
51k
views
Comment:
C: How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
10.5 years ago by
fbrundu
▴ 350
0
votes
1
reply
51k
views
Comment:
C: How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
10.5 years ago by
fbrundu
▴ 350
0
votes
1
reply
51k
views
Comment:
C: How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
10.5 years ago by
fbrundu
▴ 350
0
votes
0
replies
51k
views
Comment:
C: How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
10.5 years ago by
fbrundu
▴ 350
0
votes
0
replies
5.1k
views
Answer:
A: How To Find Gene - Probe Mapping For A Specific Affymetrix Platform
10.6 years ago by
fbrundu
▴ 350
0
votes
1
reply
5.1k
views
How To Find Gene - Probe Mapping For A Specific Affymetrix Platform
affymetrix
gene
mapping
10.8 years ago by
fbrundu
▴ 350
1
vote
1
reply
3.4k
views
At Which Step Apply A Detection Filter When Preprocessing Microarray Data? (Before/After Normalization, Batch Effects Removal)
filter
normalization
microarray
updated 10.8 years ago by
Sean Davis
27k • written 10.8 years ago by
fbrundu
▴ 350
8
votes
1
reply
11k
views
In Which Order Use Normalization And Batch Effects Removal?
normalization
microarray
updated 10.9 years ago by
Sean Davis
27k • written 10.9 years ago by
fbrundu
▴ 350
3
votes
3
replies
3.1k
views
For Which Reason Is Useful To Do Gene Wise Normalization In Microarray Matrices?
microarray
normalization
gene
updated 10.9 years ago by
Charles Warden
8.2k • written 10.9 years ago by
fbrundu
▴ 350
3
votes
2
replies
5.5k
views
In Which Type Of Data Does Combat Best Perform?
microarray
10.9 years ago by
fbrundu
▴ 350
1
vote
1
reply
3.1k
views
Negative Value On Linear Gene Expression In Microarrays
microarray
illumina
gene-expression
updated 10.9 years ago by
Sean Davis
27k • written 10.9 years ago by
fbrundu
▴ 350
0
votes
0
replies
3.6k
views
Comment:
C: Warning Using Dwd Matlab Package And Results Matrix Not Fully Non Negative
11.2 years ago by
fbrundu
▴ 350
0
votes
1
reply
3.6k
views
Comment:
C: Warning Using Dwd Matlab Package And Results Matrix Not Fully Non Negative
11.2 years ago by
fbrundu
▴ 350
0
votes
1
reply
3.6k
views
Comment:
C: Warning Using Dwd Matlab Package And Results Matrix Not Fully Non Negative
11.2 years ago by
fbrundu
▴ 350
1
vote
5
replies
3.6k
views
Warning Using Dwd Matlab Package And Results Matrix Not Fully Non Negative
microarray
matlab
updated 11.2 years ago by
Chris Cabanski
▴ 330 • written 11.2 years ago by
fbrundu
▴ 350
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