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1.1k
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Comment: Comment: RNAseq: units (TPM +0.001).
15 days ago by always_learning ★ 1.1k
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0
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103
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uniformly processing TCGA data and Gtex data
RNASeq cancer edaseq RECOUNT3
updated 8 weeks ago by 64k • written 8 weeks ago by ★ 1.1k
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1
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2.7k
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Difference between Cosmic Annotation from VEP and directly from COSMIC VCF.
VEP Annotation
updated 18 months ago by ▴ 70 • written 5.9 years ago by ★ 1.1k
1
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3
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3.7k
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Gvcf Format From Illumina
illumina ngs
updated 18 months ago by 20 • written 8.9 years ago by ★ 1.1k
1
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1
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647
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Comment: C: Method to classify given sample into subtype
22 months ago by always_learning ★ 1.1k
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1
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640
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Comment: C: RNA Seq and Somatic Calls for the Cancer data
24 months ago by always_learning ★ 1.1k
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5
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640
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RNA Seq and Somatic Calls for the Cancer data
RNA-Seq somatic tumor
updated 24 months ago by 82k • written 2.0 years ago by ★ 1.1k
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0
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640
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Comment: C: RNA Seq and Somatic Calls for the Cancer data
2.0 years ago by always_learning ★ 1.1k
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0
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5.4k
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Comment: C: GISTIC input parameters.
2.0 years ago by always_learning ★ 1.1k
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0
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880
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Comment: C: low genomic inflation factor
2.1 years ago by always_learning ★ 1.1k
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1
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4.3k
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Comment: C: genomic inflation factor calculation
2.1 years ago by always_learning ★ 1.1k
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1
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840
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GENE BURDEN TEST
EXOME GENE BURDEN
2.1 years ago by always_learning ★ 1.1k
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0
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44k
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Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 2.2 years ago by 36k • written 6.9 years ago by ★ 1.1k
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1
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1.9k
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Comment: C: How to annotate structural variants in VCF with esv/nsv identifiers
2.5 years ago by always_learning ★ 1.1k
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0
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1.9k
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Comment: C: How to annotate structural variants in VCF with esv/nsv identifiers
2.5 years ago by always_learning ★ 1.1k
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1
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1.9k
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Answer: A: How to annotate structural variants in VCF with esv/nsv identifiers
2.5 years ago by always_learning ★ 1.1k
1
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0
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2.4k
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Comment: C: Can Homozygous Snps Be Used To Construct A Phylogeny?
updated 2.7 years ago by 36k • written 8.8 years ago by ★ 1.1k
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0
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2.4k
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Answer: A: TCGA database search
updated 2.7 years ago by 36k • written 6.6 years ago by ★ 1.1k
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1
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6.1k
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Comment: C: GenomeStudio genotype format to VCF?
updated 2.7 years ago by 36k • written 6.7 years ago by ★ 1.1k
5
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2
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5.8k
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Answer: A: extracting heterozygous snp from a vcf file
updated 2.7 years ago by 36k • written 6.7 years ago by ★ 1.1k
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0
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4.5k
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Comment: C: PLINK .bim file shows chromosome 0 on Affymetrix chip
updated 2.7 years ago by 36k • written 6.7 years ago by ★ 1.1k
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1
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26k
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Comment: A: Sift Or Polyphen
2.7 years ago by always_learning ★ 1.1k
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1
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26k
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Comment: A: Sift Or Polyphen
2.7 years ago by always_learning ★ 1.1k
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1
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3.4k
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Comment: C: Somatic indel calling with Pindel
2.8 years ago by always_learning ★ 1.1k
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0
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2.0k
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Comment: C: How to convert maf file format to oncoPrint matrix (ComplexHeatmap package)?
2.8 years ago by always_learning ★ 1.1k
0
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0
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2.1k
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Comment: C: TCGA TMB: What exome size to use?
2.9 years ago by always_learning ★ 1.1k
0
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1
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15k
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Comment: C: How To Split A .Vcf.Gz File
updated 2.9 years ago by 36k • written 7.9 years ago by ★ 1.1k
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0
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7.0k
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Comment: C: MeDip-seq data interpretation + analysis / MEDIPS, MACS2
3.1 years ago by always_learning ★ 1.1k
0
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1
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2.8k
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Can Some One Explain These Gatk Unifiedgenotyper Commands And Difference In Terms Of Output Also
gatk variant ngs
updated 3.3 years ago by 20 • written 8.9 years ago by ★ 1.1k
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0
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5.6k
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Comment: C: Using parallel with Mem
updated 3.4 years ago by 82k • written 8.3 years ago by ★ 1.1k
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1
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12k
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Comment: C: Best tool for variant calling
3.4 years ago by always_learning ★ 1.1k
2
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6
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1.4k
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VCFParseError: ploidy > 2 not supported
VCF GATK PLOIDY
updated 3.5 years ago by ▴ 50 • written 3.6 years ago by ★ 1.1k
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1
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12k
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Comment: C: Best tool for variant calling
3.5 years ago by always_learning ★ 1.1k
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0
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8.3k
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Comment: C: Installing Bwa On 32 Bit Unix Machine
updated 3.6 years ago by 36k • written 9.0 years ago by ★ 1.1k
0
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1
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8.3k
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Comment: C: Installing Bwa On 32 Bit Unix Machine
updated 3.6 years ago by 36k • written 9.0 years ago by ★ 1.1k
0
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0
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4.2k
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Comment: C: Illumina Read Quality
updated 3.6 years ago by 36k • written 9.0 years ago by ★ 1.1k
0
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1
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1.4k
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Comment: C: VCFParseError: ploidy > 2 not supported
3.6 years ago by always_learning ★ 1.1k
0
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1
reply
1.4k
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Comment: C: VCFParseError: ploidy > 2 not supported
3.6 years ago by always_learning ★ 1.1k
16
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12
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8.5k
views
7 follow
Annotation for SV and CNV
Annotation CNV SV
updated 3.9 years ago by 46k • written 6.2 years ago by ★ 1.1k
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0
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1.2k
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Comment: C: AF comparison between two population.
3.9 years ago by always_learning ★ 1.1k
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0
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1.2k
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Comment: C: AF comparison between two population.
3.9 years ago by always_learning ★ 1.1k
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0
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1.2k
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Comment: C: AF comparison between two population.
3.9 years ago by always_learning ★ 1.1k
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1
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1.2k
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Comment: C: AF comparison between two population.
3.9 years ago by always_learning ★ 1.1k
1
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7
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1.2k
views
AF comparison between two population.
R Statistical test AF
3.9 years ago by always_learning ★ 1.1k
0
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1
reply
4.3k
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Comment: A: VCF file period symbol in the genotype
3.9 years ago by always_learning ★ 1.1k
0
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1
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3.1k
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Comment: C: Subset VCF file by comparing CHROM,POS,REF and ALT
4.0 years ago by always_learning ★ 1.1k
0
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1
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3.1k
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Comment: C: Subset VCF file by comparing CHROM,POS,REF and ALT
updated 4.0 years ago by 36k • written 4.0 years ago by ★ 1.1k
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0
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2.5k
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Answer: A: Looking for walkthrough guide on Rare Variant Association Analysis
4.0 years ago by always_learning ★ 1.1k
0
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1
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21k
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format
4.1 years ago by always_learning ★ 1.1k
3
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4
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2.5k
views
Extracting upstream and Downstream of a Gene based on different intervals
intervals upstream
updated 4.2 years ago by ★ 2.3k • written 4.2 years ago by ★ 1.1k
274 results • Page 1 of 6
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