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4.6k
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Comment: C: problems updating biomaRt in R version 3.0
updated 3.4 years ago by 39k • written 9.1 years ago by ▴ 140
0
votes
1
reply
2.6k
views
Comment: C: Inconsistencies between snp coordinates and alleles across references
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 140
2
votes
7
replies
4.6k
views
.bam file of human reference genome (hg19)
samtools
updated 13 months ago by 39k • written 8.3 years ago by ▴ 140
2
votes
1
reply
1.8k
views
On what strand are the mutations shown in MAF files
maf
updated 16 months ago by 39k • written 8.6 years ago by ▴ 140
2
votes
6
replies
2.3k
views
Cds From Ucsc Not Always Modulus 3
ucsc
updated 6.0 years ago by ★ 2.7k • written 9.8 years ago by ▴ 140
0
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1
reply
3.1k
views
Comment: C: Want to Skip Annotation Step (in MutSig_preprocess)
6.8 years ago by Max ▴ 140
0
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0
replies
2.3k
views
generating categ in mutation table for MutSigCV
mutsigcv
6.9 years ago by Max ▴ 140
0
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0
replies
2.3k
views
Comment: C: Is there a tool for counting the number of non-synonymous sites in a CDS
6.9 years ago by Max ▴ 140
0
votes
2
replies
2.3k
views
Is there a tool for counting the number of non-synonymous sites in a CDS
dnds cds ensembl biomart
updated 6.9 years ago by ★ 3.9k • written 6.9 years ago by ▴ 140
0
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0
replies
2.3k
views
Comment: C: required data files and dependences to run maf2maf and maf2vcf
6.9 years ago by Max ▴ 140
0
votes
2
replies
2.3k
views
required data files and dependences to run maf2maf and maf2vcf
maf2vcf maf2maf vcf2maf
6.9 years ago by Max ▴ 140
0
votes
0
replies
1.9k
views
baserecalibrator error: Unable to find color space information in SOLiD read
gatk baserecalibrator
7.0 years ago by Max ▴ 140
0
votes
3
replies
2.0k
views
bwa samse: invalid option 'R'
bwa
updated 7.0 years ago by 47k • written 7.0 years ago by ▴ 140
0
votes
0
replies
2.0k
views
Comment: C: bwa samse: invalid option 'R'
7.0 years ago by Max ▴ 140
0
votes
1
reply
4.2k
views
Comment: C: How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
7.0 years ago by Max ▴ 140
0
votes
1
reply
4.2k
views
Comment: C: How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
7.0 years ago by Max ▴ 140
4
votes
5
replies
4.2k
views
How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
picard AddorReplaceReadGroups GATK
updated 7.0 years ago by 103k • written 7.0 years ago by ▴ 140
1
vote
0
replies
2.3k
views
Strange mixture of GRch37 and hg19 indices in TCGA bam files
mutect tcga alignment
7.0 years ago by Max ▴ 140
0
votes
0
replies
2.7k
views
Comment: C: Ensembl biomart attribute for number of synonymous vs. non-synonymou sites
7.6 years ago by Max ▴ 140
0
votes
2
replies
2.7k
views
Ensembl biomart attribute for number of synonymous vs. non-synonymou sites
ensembl biomart
updated 7.6 years ago by 23k • written 7.6 years ago by ▴ 140
4
votes
6
replies
2.6k
views
Inconsistencies between snp coordinates and alleles across references
UCSC Ensembl SNP dbSNP
updated 9 months ago by 39k • written 7.6 years ago by ▴ 140
0
votes
1
reply
2.4k
views
Comment: C: compiling clustalx executables
7.7 years ago by Max ▴ 140
1
vote
3
replies
2.4k
views
compiling clustalx executables
clustalx
updated 8 months ago by 39k • written 7.7 years ago by ▴ 140
0
votes
0
replies
1.4k
views
options for converting sra files other than nih sra toolkit
sra
7.7 years ago by Max ▴ 140
0
votes
2
replies
2.3k
views
Dealing with CNV overlap
CNV
updated 5 months ago by 39k • written 8.0 years ago by ▴ 140
3
votes
2
replies
3.7k
views
Retrieving Dn Or Ds From Ensembl Using Biomart
biomart ensembl
updated 2.1 years ago by 39k • written 9.2 years ago by ▴ 140
0
votes
0
replies
2.7k
views
Comment: C: Selecting TCGA samples by barcode in CG Hub
8.1 years ago by Max ▴ 140
3
votes
2
replies
2.7k
views
Selecting TCGA samples by barcode in CG Hub
CGHUB TCGA
updated 8.1 years ago by 5.9k • written 8.1 years ago by ▴ 140
0
votes
1
reply
4.6k
views
Comment: C: .bam file of human reference genome (hg19)
8.3 years ago by Max ▴ 140
0
votes
1
reply
2.0k
views
Comment: Comment: Issues with local installation of SomaticSniper
updated 13 months ago by 39k • written 8.3 years ago by ▴ 140
0
votes
0
replies
2.0k
views
Comment: Comment: Issues with local installation of SomaticSniper
updated 13 months ago by 39k • written 8.3 years ago by ▴ 140
0
votes
0
replies
2.0k
views
Comment: Comment: Issues with local installation of SomaticSniper
updated 13 months ago by 39k • written 8.3 years ago by ▴ 140
1
vote
7
replies
2.0k
views
Issues with local installation of SomaticSniper
SomaticSniper
updated 13 months ago by 39k • written 8.3 years ago by ▴ 140
1
vote
0
replies
2.8k
views
Estimating background mutation rates from MutSig (Broad Institute)
MutSig BMR
8.8 years ago by Max ▴ 140
0
votes
5
replies
2.5k
views
Coordinate Mismatch For Exons From Ucsc Genome
ucsc exon coordinates
updated 18 months ago by 39k • written 9.9 years ago by ▴ 140
0
votes
3
replies
4.6k
views
problems updating biomaRt in R version 3.0
BiomaRt bioconductor
updated 20 months ago by 39k • written 9.1 years ago by ▴ 140
1
vote
1
reply
4.0k
views
Are There "Standard" Quality Score Cutoffs For Gatk Vcf'S
gatk
updated 9.2 years ago by 8.2k • written 9.2 years ago by ▴ 140
0
votes
0
replies
3.7k
views
Comment: Comment: Retrieving Dn Or Ds From Ensembl Using Biomart
updated 2.1 years ago by 39k • written 9.2 years ago by ▴ 140
0
votes
0
replies
2.9k
views
Comment: C: Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
9.2 years ago by Max ▴ 140
0
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0
replies
2.9k
views
Comment: C: Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
9.2 years ago by Max ▴ 140
1
vote
4
replies
2.9k
views
Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
ensembl
updated 9.2 years ago by ★ 1.7k • written 9.2 years ago by ▴ 140
0
votes
1
reply
3.5k
views
Comment: C: Negative Sense Exon Strand Coordinates In Ucsc
9.2 years ago by Max ▴ 140
3
votes
3
replies
3.5k
views
Negative Sense Exon Strand Coordinates In Ucsc
ucsc
updated 9.2 years ago by 23k • written 9.2 years ago by ▴ 140
0
votes
0
replies
1.8k
views
Distance Of "Linked" Genes In Snpper
dbsnp ucsc
9.5 years ago by Max ▴ 140
0
votes
1
reply
2.3k
views
Comment: C: Cds From Ucsc Not Always Modulus 3
9.8 years ago by Max ▴ 140
0
votes
2
replies
2.3k
views
Comment: C: Cds From Ucsc Not Always Modulus 3
9.8 years ago by Max ▴ 140
0
votes
0
replies
3.0k
views
Comment: C: Obtaining All Cds Sequences (I.E. All Spliced Exon Variants) From Ucsc
9.8 years ago by Max ▴ 140
0
votes
2
replies
3.0k
views
Obtaining All Cds Sequences (I.E. All Spliced Exon Variants) From Ucsc
cds ucsc
updated 9.8 years ago by 154k • written 9.8 years ago by ▴ 140
0
votes
0
replies
2.9k
views
Comment: C: Exons Associated With Multiple "Genes" In Ucsc Genome Data
9.8 years ago by Max ▴ 140
3
votes
2
replies
2.9k
views
Exons Associated With Multiple "Genes" In Ucsc Genome Data
exon ucsc genome
updated 9.8 years ago by ★ 1.5k • written 9.8 years ago by ▴ 140
60 results • Page 1 of 2
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