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0
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5.5k
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Comment: C: problems updating biomaRt in R version 3.0
updated 5.3 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: Inconsistencies between snp coordinates and alleles across references
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 150
2
votes
7
replies
5.5k
views
.bam file of human reference genome (hg19)
samtools
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 150
2
votes
1
reply
2.2k
views
On what strand are the mutations shown in MAF files
maf
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 150
2
votes
6
replies
3.1k
views
Cds From Ucsc Not Always Modulus 3
ucsc
updated 7.9 years ago by ★ 2.8k • written 11.7 years ago by ▴ 150
0
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1
reply
3.9k
views
Comment: C: Want to Skip Annotation Step (in MutSig_preprocess)
8.7 years ago by Max ▴ 150
0
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0
replies
2.6k
views
generating categ in mutation table for MutSigCV
mutsigcv
8.7 years ago by Max ▴ 150
0
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0
replies
2.9k
views
Comment: C: Is there a tool for counting the number of non-synonymous sites in a CDS
8.8 years ago by Max ▴ 150
0
votes
2
replies
2.9k
views
Is there a tool for counting the number of non-synonymous sites in a CDS
dnds cds ensembl biomart
updated 8.8 years ago by ★ 4.0k • written 8.8 years ago by ▴ 150
0
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0
replies
2.8k
views
Comment: C: required data files and dependences to run maf2maf and maf2vcf
8.8 years ago by Max ▴ 150
0
votes
2
replies
2.8k
views
required data files and dependences to run maf2maf and maf2vcf
maf2vcf maf2maf vcf2maf
8.8 years ago by Max ▴ 150
0
votes
0
replies
2.1k
views
baserecalibrator error: Unable to find color space information in SOLiD read
gatk baserecalibrator
8.8 years ago by Max ▴ 150
0
votes
3
replies
2.3k
views
bwa samse: invalid option 'R'
bwa
updated 8.9 years ago by 47k • written 8.9 years ago by ▴ 150
0
votes
0
replies
2.3k
views
Comment: C: bwa samse: invalid option 'R'
8.9 years ago by Max ▴ 150
0
votes
1
reply
5.1k
views
Comment: C: How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
8.9 years ago by Max ▴ 150
0
votes
1
reply
5.1k
views
Comment: C: How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
8.9 years ago by Max ▴ 150
4
votes
5
replies
5.1k
views
How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
picard AddorReplaceReadGroups GATK
updated 8.9 years ago by 105k • written 8.9 years ago by ▴ 150
1
vote
0
replies
2.6k
views
Strange mixture of GRch37 and hg19 indices in TCGA bam files
mutect tcga alignment
8.9 years ago by Max ▴ 150
0
votes
0
replies
3.2k
views
Comment: C: Ensembl biomart attribute for number of synonymous vs. non-synonymou sites
9.5 years ago by Max ▴ 150
0
votes
2
replies
3.2k
views
Ensembl biomart attribute for number of synonymous vs. non-synonymou sites
ensembl biomart
updated 9.5 years ago by 24k • written 9.5 years ago by ▴ 150
6
votes
6
replies
3.4k
views
Inconsistencies between snp coordinates and alleles across references
UCSC Ensembl SNP dbSNP
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 150
0
votes
1
reply
3.1k
views
Comment: C: compiling clustalx executables
9.5 years ago by Max ▴ 150
1
vote
3
replies
3.1k
views
compiling clustalx executables
clustalx
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 150
0
votes
0
replies
1.6k
views
options for converting sra files other than nih sra toolkit
sra
9.6 years ago by Max ▴ 150
0
votes
2
replies
2.7k
views
Dealing with CNV overlap
CNV
updated 2.3 years ago by 45k • written 9.8 years ago by ▴ 150
3
votes
2
replies
4.3k
views
Retrieving Dn Or Ds From Ensembl Using Biomart
biomart ensembl
updated 4.0 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
0
replies
3.2k
views
Comment: C: Selecting TCGA samples by barcode in CG Hub
10.0 years ago by Max ▴ 150
3
votes
2
replies
3.2k
views
Selecting TCGA samples by barcode in CG Hub
CGHUB TCGA
updated 10.0 years ago by 6.1k • written 10.0 years ago by ▴ 150
0
votes
1
reply
5.5k
views
Comment: C: .bam file of human reference genome (hg19)
10.2 years ago by Max ▴ 150
0
votes
1
reply
2.6k
views
Comment: Comment: Issues with local installation of SomaticSniper
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 150
0
votes
0
replies
2.6k
views
Comment: Comment: Issues with local installation of SomaticSniper
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 150
0
votes
0
replies
2.6k
views
Comment: Comment: Issues with local installation of SomaticSniper
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 150
1
vote
7
replies
2.6k
views
Issues with local installation of SomaticSniper
SomaticSniper
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 150
1
vote
0
replies
3.1k
views
Estimating background mutation rates from MutSig (Broad Institute)
MutSig BMR
10.7 years ago by Max ▴ 150
0
votes
5
replies
3.1k
views
Coordinate Mismatch For Exons From Ucsc Genome
ucsc exon coordinates
updated 3.4 years ago by 45k • written 11.7 years ago by ▴ 150
0
votes
3
replies
5.5k
views
problems updating biomaRt in R version 3.0
BiomaRt bioconductor
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 150
1
vote
1
reply
4.4k
views
Are There "Standard" Quality Score Cutoffs For Gatk Vcf'S
gatk
updated 11.1 years ago by 8.3k • written 11.1 years ago by ▴ 150
0
votes
0
replies
4.3k
views
Comment: Comment: Retrieving Dn Or Ds From Ensembl Using Biomart
updated 4.0 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
0
replies
3.5k
views
Comment: C: Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
11.1 years ago by Max ▴ 150
0
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0
replies
3.5k
views
Comment: C: Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
11.1 years ago by Max ▴ 150
1
vote
4
replies
3.5k
views
Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
ensembl
updated 11.1 years ago by ★ 1.7k • written 11.1 years ago by ▴ 150
0
votes
1
reply
4.2k
views
Comment: C: Negative Sense Exon Strand Coordinates In Ucsc
11.1 years ago by Max ▴ 150
3
votes
3
replies
4.2k
views
Negative Sense Exon Strand Coordinates In Ucsc
ucsc
updated 11.1 years ago by 24k • written 11.1 years ago by ▴ 150
0
votes
0
replies
2.1k
views
Distance Of "Linked" Genes In Snpper
dbsnp ucsc
11.4 years ago by Max ▴ 150
0
votes
1
reply
3.1k
views
Comment: C: Cds From Ucsc Not Always Modulus 3
11.7 years ago by Max ▴ 150
0
votes
2
replies
3.1k
views
Comment: C: Cds From Ucsc Not Always Modulus 3
11.7 years ago by Max ▴ 150
0
votes
0
replies
3.5k
views
Comment: C: Obtaining All Cds Sequences (I.E. All Spliced Exon Variants) From Ucsc
11.7 years ago by Max ▴ 150
0
votes
2
replies
3.5k
views
Obtaining All Cds Sequences (I.E. All Spliced Exon Variants) From Ucsc
cds ucsc
updated 11.7 years ago by 166k • written 11.7 years ago by ▴ 150
0
votes
0
replies
3.4k
views
Comment: C: Exons Associated With Multiple "Genes" In Ucsc Genome Data
11.7 years ago by Max ▴ 150
3
votes
2
replies
3.4k
views
Exons Associated With Multiple "Genes" In Ucsc Genome Data
exon ucsc genome
updated 11.7 years ago by ★ 1.5k • written 11.7 years ago by ▴ 150
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