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0
votes
1
reply
5.3k
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Comment:
C: problems updating biomaRt in R version 3.0
updated 4.8 years ago by
Ram
44k • written 10.5 years ago by
Max
▴ 150
0
votes
1
reply
3.2k
views
Comment:
C: Inconsistencies between snp coordinates and alleles across references
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
Max
▴ 150
2
votes
7
replies
5.2k
views
.bam file of human reference genome (hg19)
samtools
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
Max
▴ 150
2
votes
1
reply
2.1k
views
On what strand are the mutations shown in MAF files
maf
updated 2.7 years ago by
Ram
44k • written 10.0 years ago by
Max
▴ 150
2
votes
6
replies
2.9k
views
Cds From Ucsc Not Always Modulus 3
ucsc
updated 7.4 years ago by
Petr Ponomarenko
★ 2.8k • written 11.2 years ago by
Max
▴ 150
0
votes
1
reply
3.6k
views
Comment:
C: Want to Skip Annotation Step (in MutSig_preprocess)
8.2 years ago by
Max
▴ 150
0
votes
0
replies
2.5k
views
generating categ in mutation table for MutSigCV
mutsigcv
8.2 years ago by
Max
▴ 150
0
votes
0
replies
2.7k
views
Comment:
C: Is there a tool for counting the number of non-synonymous sites in a CDS
8.3 years ago by
Max
▴ 150
0
votes
2
replies
2.7k
views
Is there a tool for counting the number of non-synonymous sites in a CDS
dnds
cds
ensembl
biomart
updated 8.3 years ago by
natasha.sernova
★ 4.0k • written 8.3 years ago by
Max
▴ 150
0
votes
0
replies
2.7k
views
Comment:
C: required data files and dependences to run maf2maf and maf2vcf
8.3 years ago by
Max
▴ 150
0
votes
2
replies
2.7k
views
required data files and dependences to run maf2maf and maf2vcf
maf2vcf
maf2maf
vcf2maf
8.3 years ago by
Max
▴ 150
0
votes
0
replies
2.1k
views
baserecalibrator error: Unable to find color space information in SOLiD read
gatk
baserecalibrator
8.3 years ago by
Max
▴ 150
0
votes
3
replies
2.2k
views
bwa samse: invalid option 'R'
bwa
updated 8.3 years ago by
WouterDeCoster
47k • written 8.3 years ago by
Max
▴ 150
0
votes
0
replies
2.2k
views
Comment:
C: bwa samse: invalid option 'R'
8.3 years ago by
Max
▴ 150
0
votes
1
reply
4.8k
views
Comment:
C: How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
8.4 years ago by
Max
▴ 150
0
votes
1
reply
4.8k
views
Comment:
C: How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
8.4 years ago by
Max
▴ 150
4
votes
5
replies
4.8k
views
How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
picard
AddorReplaceReadGroups
GATK
updated 8.4 years ago by
Devon Ryan
104k • written 8.4 years ago by
Max
▴ 150
1
vote
0
replies
2.5k
views
Strange mixture of GRch37 and hg19 indices in TCGA bam files
mutect
tcga
alignment
8.4 years ago by
Max
▴ 150
0
votes
0
replies
3.1k
views
Comment:
C: Ensembl biomart attribute for number of synonymous vs. non-synonymou sites
8.9 years ago by
Max
▴ 150
0
votes
2
replies
3.1k
views
Ensembl biomart attribute for number of synonymous vs. non-synonymou sites
ensembl
biomart
updated 8.9 years ago by
Emily
24k • written 8.9 years ago by
Max
▴ 150
6
votes
6
replies
3.2k
views
Inconsistencies between snp coordinates and alleles across references
UCSC
Ensembl
SNP
dbSNP
updated 2.1 years ago by
Ram
44k • written 9.0 years ago by
Max
▴ 150
0
votes
1
reply
2.8k
views
Comment:
C: compiling clustalx executables
9.0 years ago by
Max
▴ 150
1
vote
3
replies
2.8k
views
compiling clustalx executables
clustalx
updated 2.1 years ago by
Ram
44k • written 9.0 years ago by
Max
▴ 150
0
votes
0
replies
1.5k
views
options for converting sra files other than nih sra toolkit
sra
9.0 years ago by
Max
▴ 150
0
votes
2
replies
2.6k
views
Dealing with CNV overlap
CNV
updated 21 months ago by
Ram
44k • written 9.3 years ago by
Max
▴ 150
3
votes
2
replies
4.2k
views
Retrieving Dn Or Ds From Ensembl Using Biomart
biomart
ensembl
updated 3.5 years ago by
Ram
44k • written 10.6 years ago by
Max
▴ 150
0
votes
0
replies
3.1k
views
Comment:
C: Selecting TCGA samples by barcode in CG Hub
9.5 years ago by
Max
▴ 150
3
votes
2
replies
3.1k
views
Selecting TCGA samples by barcode in CG Hub
CGHUB
TCGA
updated 9.5 years ago by
Cyriac Kandoth
6.1k • written 9.5 years ago by
Max
▴ 150
0
votes
1
reply
5.2k
views
Comment:
C: .bam file of human reference genome (hg19)
9.6 years ago by
Max
▴ 150
0
votes
1
reply
2.4k
views
Comment:
Comment: Issues with local installation of SomaticSniper
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
Max
▴ 150
0
votes
0
replies
2.4k
views
Comment:
Comment: Issues with local installation of SomaticSniper
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
Max
▴ 150
0
votes
0
replies
2.4k
views
Comment:
Comment: Issues with local installation of SomaticSniper
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
Max
▴ 150
1
vote
7
replies
2.4k
views
Issues with local installation of SomaticSniper
SomaticSniper
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
Max
▴ 150
1
vote
0
replies
3.1k
views
Estimating background mutation rates from MutSig (Broad Institute)
MutSig
BMR
10.1 years ago by
Max
▴ 150
0
votes
5
replies
2.9k
views
Coordinate Mismatch For Exons From Ucsc Genome
ucsc
exon
coordinates
updated 2.9 years ago by
Ram
44k • written 11.2 years ago by
Max
▴ 150
0
votes
3
replies
5.3k
views
problems updating biomaRt in R version 3.0
BiomaRt
bioconductor
updated 3.0 years ago by
Ram
44k • written 10.5 years ago by
Max
▴ 150
1
vote
1
reply
4.3k
views
Are There "Standard" Quality Score Cutoffs For Gatk Vcf'S
gatk
updated 10.5 years ago by
Charles Warden
8.3k • written 10.5 years ago by
Max
▴ 150
0
votes
0
replies
4.2k
views
Comment:
Comment: Retrieving Dn Or Ds From Ensembl Using Biomart
updated 3.5 years ago by
Ram
44k • written 10.6 years ago by
Max
▴ 150
0
votes
0
replies
3.3k
views
Comment:
C: Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
10.6 years ago by
Max
▴ 150
0
votes
0
replies
3.3k
views
Comment:
C: Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
10.6 years ago by
Max
▴ 150
1
vote
4
replies
3.3k
views
Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
ensembl
updated 10.6 years ago by
Biojl
★ 1.7k • written 10.6 years ago by
Max
▴ 150
0
votes
1
reply
3.9k
views
Comment:
C: Negative Sense Exon Strand Coordinates In Ucsc
10.6 years ago by
Max
▴ 150
3
votes
3
replies
3.9k
views
Negative Sense Exon Strand Coordinates In Ucsc
ucsc
updated 10.6 years ago by
Emily
24k • written 10.6 years ago by
Max
▴ 150
0
votes
0
replies
2.0k
views
Distance Of "Linked" Genes In Snpper
dbsnp
ucsc
10.9 years ago by
Max
▴ 150
0
votes
1
reply
2.9k
views
Comment:
C: Cds From Ucsc Not Always Modulus 3
11.2 years ago by
Max
▴ 150
0
votes
2
replies
2.9k
views
Comment:
C: Cds From Ucsc Not Always Modulus 3
11.2 years ago by
Max
▴ 150
0
votes
0
replies
3.3k
views
Comment:
C: Obtaining All Cds Sequences (I.E. All Spliced Exon Variants) From Ucsc
11.2 years ago by
Max
▴ 150
0
votes
2
replies
3.3k
views
Obtaining All Cds Sequences (I.E. All Spliced Exon Variants) From Ucsc
cds
ucsc
updated 11.2 years ago by
Pierre Lindenbaum
164k • written 11.2 years ago by
Max
▴ 150
0
votes
0
replies
3.2k
views
Comment:
C: Exons Associated With Multiple "Genes" In Ucsc Genome Data
11.2 years ago by
Max
▴ 150
3
votes
2
replies
3.2k
views
Exons Associated With Multiple "Genes" In Ucsc Genome Data
exon
ucsc
genome
updated 11.2 years ago by
Geparada
★ 1.5k • written 11.2 years ago by
Max
▴ 150
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