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5
votes
8
replies
598
views
Segmentation fault (core dumped)
Segmentation-fault BLAT
updated 3 months ago by 44k • written 3 months ago by ▴ 10
7
votes
3
replies
511
views
Can any one help me in intersect and merge in my correlation plot ?
corrplot Rscript Correlation
4 months ago by isha.lily20 ▴ 10
1
vote
2
replies
763
views
What is the command line to map XLOC_ids from cufflinks with rice LOC_ids from msu
mapping
18 months ago by isha.lily20 ▴ 10
1
vote
2
replies
1.1k
views
How to find coordinates of TSS from 5pUTR and TTS from 3pUTR in transcriptome/ mRNA ?
coordinates
7 weeks ago by isha.lily20 ▴ 10
3
votes
2
replies
1.2k
views
How to calculate/ extract co-ordinates of TSS and TTS from gtf file in excel ?
extract TSS gtf calculate TTS
updated 2.1 years ago by 20k • written 2.1 years ago by ▴ 10
1
vote
1
reply
562
views
How to find out TSS and TTS from rice transcriptome data ?
Transcriptome TSS TTS Rice
updated 2.1 years ago by 4.6k • written 2.1 years ago by ▴ 10
2
votes
2
replies
643
views
What are the Distribution in transcriptomes ?
Distribution Transcriptomes
updated 2.1 years ago by 55k • written 2.1 years ago by ▴ 10
0
votes
0
replies
588
views
How to extract promoter coordinates from transcriptome.gtf file generated after cuffmerge ? file only has exon in annotation
cuffmerge promoter
updated 4 months ago by 44k • written 2.5 years ago by ▴ 10
9
votes
6
replies
2.5k
views
how to fetch intron coordinates from transcriptome.gtf file ? is there any direct tool ?
intron
updated 4 months ago by 44k • written 2.5 years ago by ▴ 10
2
votes
1
reply
662
views
how to find coordinates of 5prime and 3prime utr from transcriptome data generated after cuffmerge only contains exon in gtf
transcriptome cuffmerge
updated 4 months ago by 44k • written 2.6 years ago by ▴ 10
4
votes
5
replies
1.4k
views
can I take promoter upstream 2kb from tss ?
tss promoter
updated 4 months ago by 44k • written 2.6 years ago by ▴ 10
1
vote
1
reply
542
views
How to do transcriptome annotation through transcriptome annotation gtf file obtained after cuffllinks?
gtf transcriptome annotation
updated 4 months ago by 44k • written 2.7 years ago by ▴ 10
0
votes
0
replies
388
views
How to find out co-occurrence of motifs with tfbs ?
motif co-occurrence tfbs
updated 4 months ago by 44k • written 2.8 years ago by ▴ 10
1
vote
1
reply
736
views
How to map query coordinates on to genome gff annotation files ?
mapping gff annotation
updated 4 months ago by 44k • written 3.0 years ago by ▴ 10
6
votes
4
replies
2.5k
views
How to extract promoter sequences from rice transcriptome.gtf file ?
gtf
updated 4 months ago by 44k • written 3.1 years ago by ▴ 10
1
vote
1
reply
1.2k
views
How to find/extract sequences of protein coding genes and Transposable elements from rice transciptome.gtf file ?
gtf
updated 4 months ago by 44k • written 3.1 years ago by ▴ 10
6
votes
10
replies
2.0k
views
Perl script on rna G quadruplex
perl G-quadruplex rna
updated 4 months ago by 44k • written 3.4 years ago by ▴ 10
4
votes
6
replies
1.7k
views
How to find out TFBS motifs within 5'-UTR sequences
5prime-UTR TFBSmotifs
updated 4 months ago by 44k • written 3.4 years ago by ▴ 10
2
votes
8
replies
1.6k
views
GC content of specific regular expression
GC-content
updated 4 months ago by 44k • written 3.4 years ago by ▴ 10
5
votes
4
replies
1.1k
views
orthology enrichment
orthology
updated 4 months ago by 44k • written 3.4 years ago by ▴ 10
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