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Comment: C: what TCGA biospecimen filter should be selected for retrieving "invasive ductal
7.3 years ago by nazaninhoseinkhan ▴ 530
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2.1k
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Comment: C: what TCGA biospecimen filter should be selected for retrieving "invasive ductal
7.3 years ago by nazaninhoseinkhan ▴ 530
2
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5
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2.1k
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what TCGA biospecimen filter should be selected for retrieving "invasive ductal breast carcinoma" data?
TCGA invasive ductal carcinoma
7.3 years ago by nazaninhoseinkhan ▴ 530
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3.3k
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Comment: C: Is it correct if we use htseq counts as raw read counts in DESEq2?
7.4 years ago by nazaninhoseinkhan ▴ 530
2
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5
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3.3k
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Is it correct if we use htseq counts as raw read counts in DESEq2?
RNA-Seq DESeq2 htseqCounts
updated 7.4 years ago by 105k • written 7.4 years ago by ▴ 530
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Comment: C: Is it correct if we use htseq counts as raw read counts in DESEq2?
7.4 years ago by nazaninhoseinkhan ▴ 530
1
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0
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7.2k
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Comment: C: problem in matching the names between file names and patients Id in TCGA
7.4 years ago by nazaninhoseinkhan ▴ 530
0
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1
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7.2k
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Comment: C: problem in matching the names between file names and patients Id in TCGA
7.4 years ago by nazaninhoseinkhan ▴ 530
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0
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1.7k
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Comment: C: how to define different batches in DESeq2 in Galaxy
7.4 years ago by nazaninhoseinkhan ▴ 530
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0
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2.2k
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Comment: C: HTSeq-counts can not map any reads to gtf file
7.4 years ago by nazaninhoseinkhan ▴ 530
1
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3
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2.2k
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HTSeq-counts can not map any reads to gtf file
RNA-Seq htseq-counts no mapped reads
updated 7.4 years ago by 9.0k • written 7.4 years ago by ▴ 530
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16k
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Comment: C: error in getting results from DESeq2
7.4 years ago by nazaninhoseinkhan ▴ 530
0
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5
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16k
views
error in getting results from DESeq2
DESeq2 results error
updated 7.4 years ago by 105k • written 7.4 years ago by ▴ 530
0
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1
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7.2k
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Comment: C: problem in matching the names between file names and patients Id in TCGA
7.4 years ago by nazaninhoseinkhan ▴ 530
0
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1
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7.2k
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Comment: C: problem in matching the names between file names and patients Id in TCGA
7.4 years ago by nazaninhoseinkhan ▴ 530
0
votes
1
reply
7.2k
views
Comment: C: problem in matching the names between file names and patients Id in TCGA
7.4 years ago by nazaninhoseinkhan ▴ 530
0
votes
1
reply
7.2k
views
Comment: C: problem in matching the names between file names and patients Id in TCGA
updated 7.4 years ago by 154k • written 7.4 years ago by ▴ 530
0
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0
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7.2k
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Comment: C: problem in matching the names between file names and patients Id in TCGA
7.4 years ago by nazaninhoseinkhan ▴ 530
0
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2
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7.2k
views
Comment: C: problem in matching the names between file names and patients Id in TCGA
7.4 years ago by nazaninhoseinkhan ▴ 530
0
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1
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3.0k
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Comment: C: Low number of healthy samples in TCGA
7.4 years ago by nazaninhoseinkhan ▴ 530
5
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3
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3.0k
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Low number of healthy samples in TCGA
TCGA GDC portal Healthy samples or adjacent normal
updated 7.4 years ago by 89k • written 7.4 years ago by ▴ 530
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0
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4.6k
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Comment: C: error in "DESeqDataSetFromMatrix" function in DESeq2
7.4 years ago by nazaninhoseinkhan ▴ 530
1
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1
reply
3.1k
views
removing batch effects from large number of data sets
Microarray batch-effect
updated 18 months ago by 45k • written 7.4 years ago by ▴ 530
0
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1
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4.6k
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Comment: C: error in "DESeqDataSetFromMatrix" function in DESeq2
7.4 years ago by nazaninhoseinkhan ▴ 530
0
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4
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4.6k
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error in "DESeqDataSetFromMatrix" function in DESeq2
RNA-Seq DESeq2 error message
updated 7.4 years ago by 105k • written 7.4 years ago by ▴ 530
0
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0
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1.8k
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Differential co-expression analysis on TCGA transcriptomic data
RNA-Seq miRNA-Seq differential expression
7.4 years ago by nazaninhoseinkhan ▴ 530
0
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0
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2.3k
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Comment: C: How to download data for normal solid tissue from GDC using TCG2bed
7.4 years ago by nazaninhoseinkhan ▴ 530
1
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2
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2.3k
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How to download data for normal solid tissue from GDC using TCG2bed
TCGA2BED Normal data GDC portal
7.4 years ago by nazaninhoseinkhan ▴ 530
0
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0
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1.5k
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Drawing heatmap of expression data using GENE-E
Scaling Heatmap GENE-E
7.5 years ago by nazaninhoseinkhan ▴ 530
0
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1
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2.3k
views
How to change the format of CNV files (.txt) obtained from GDC to accepted formats of Variant Effect Predictor?
CNV GDC
updated 2.3 years ago by 45k • written 7.5 years ago by ▴ 530
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0
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2.1k
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Comment: C: Illumina BeadChip Array probe file Vs control probe file
7.5 years ago by nazaninhoseinkhan ▴ 530
0
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1
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2.4k
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Removing batch effects between Affymetrix and Agilent platforms using ComBat
Microarray Affymetrix Agilent ComBat
updated 7.5 years ago by 6.7k • written 7.5 years ago by ▴ 530
0
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0
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6.0k
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Comment: C: batch effect removal from several RNASeq experiments
7.5 years ago by nazaninhoseinkhan ▴ 530
1
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2
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6.0k
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batch effect removal from several RNASeq experiments
RNA-Seq Batch effect removal
7.5 years ago by nazaninhoseinkhan ▴ 530
0
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1
reply
1.2k
views
Preparing functional gene set for DECODE program
DECODE Functional gene set
updated 7.6 years ago by 35k • written 7.7 years ago by ▴ 530
3
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5
replies
10k
views
Biobase library in R
R
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 530
0
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1
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2.1k
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Answer: A: StringTie error: list index out of range
7.7 years ago by nazaninhoseinkhan ▴ 530
0
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3
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2.1k
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StringTie error: list index out of range
StringTie error Galaxy
7.7 years ago by nazaninhoseinkhan ▴ 530
0
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4
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2.6k
views
StringTie cannot be run as a problem in naming convention
StringTie Gene naming convention GTF
updated 7.7 years ago by ★ 1.7k • written 7.7 years ago by ▴ 530
0
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0
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2.6k
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Comment: C: StringTie cannot be run as a problem in naming convention
7.7 years ago by nazaninhoseinkhan ▴ 530
0
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1
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1.3k
views
cannot permanently delete a collection of data sets to retrieve the memory in GALAXY
collection of data sets permanently delete galaxy
7.8 years ago by nazaninhoseinkhan ▴ 530
1
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6
replies
1.9k
views
CuffDiff results does not seem correct
RNA-Seq CuffDiff Galaxy
7.9 years ago by nazaninhoseinkhan ▴ 530
2
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1
reply
3.1k
views
Is it correct to consider the genes of grey module resulted from consensus network analysis (WGCNA) as differential expressed?
WGCNA Consensus network Differential expressed
updated 7.9 years ago by 105k • written 7.9 years ago by ▴ 530
0
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0
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3.1k
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Answer: A: what to do when adjusted p-values are not acceptable in RNASeq?
8.1 years ago by nazaninhoseinkhan ▴ 530
3
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5
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3.1k
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what to do when adjusted p-values are not acceptable in RNASeq?
RNA-Seq FDR
8.1 years ago by nazaninhoseinkhan ▴ 530
0
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0
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2.6k
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Comment: C: Deseq2 does not recognize htseq count outputs
8.2 years ago by nazaninhoseinkhan ▴ 530
0
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1
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2.6k
views
Comment: C: Deseq2 does not recognize htseq count outputs
8.2 years ago by nazaninhoseinkhan ▴ 530
0
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1
reply
2.6k
views
Comment: C: Deseq2 does not recognize htseq count outputs
8.2 years ago by nazaninhoseinkhan ▴ 530
0
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1
reply
2.6k
views
Comment: C: Deseq2 does not recognize htseq count outputs
8.2 years ago by nazaninhoseinkhan ▴ 530
1
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9
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2.6k
views
Deseq2 does not recognize htseq count outputs
RNA-Seq Deseq2 inputs are not recognized
8.2 years ago by nazaninhoseinkhan ▴ 530
307 results • Page 4 of 7
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