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0
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1
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222
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PEAR seems to have sense to me
PEAR
updated 6 weeks ago by 142k • written 6 weeks ago by ▴ 80
0
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0
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149
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MultiGemini is not doing indel realignment, right?? Gemini does't work with single read?
MultiGemini
10 weeks ago by ManuelDB ▴ 80
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0
replies
605
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Comment: Comment: 1 Bioinformatician position in San Sebastian (Spain)
10 weeks ago by ManuelDB ▴ 80
0
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0
replies
221
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Comment: Comment: FastaAlternateReferenceMaker merges overlapping regions
12 weeks ago by ManuelDB ▴ 80
0
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1
reply
221
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FastaAlternateReferenceMaker merges overlapping regions
FastaAlternateReferenceMaker
updated 12 weeks ago by 43k • written 12 weeks ago by ▴ 80
0
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0
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495
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Comment: Comment: CIGAR and query sequence lengths differ
4 months ago by ManuelDB ▴ 80
0
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0
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495
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Comment: Comment: CIGAR and query sequence lengths differ
4 months ago by ManuelDB ▴ 80
1
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3
replies
495
views
CIGAR and query sequence lengths differ
pysam samtools
4 months ago by ManuelDB ▴ 80
1
vote
1
reply
391
views
How to properly mock a (Pysam) read
pysam
updated 4 months ago by 100k • written 4 months ago by ▴ 80
2
votes
1
reply
430
views
Issue softclipping reads when they belong and don't belong to a common amplicon
Samtools softclip
updated 5 months ago by ▴ 270 • written 5 months ago by ▴ 80
1
vote
1
reply
281
views
Two identical reads in my bam files but with a different in CIGAR are mapped in a different location in IGV
pysam
5 months ago by ManuelDB ▴ 80
1
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0
replies
281
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Answer: Answer: Two identical reads in my bam files but with a different in CIGAR are mapped in
5 months ago by ManuelDB ▴ 80
0
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0
replies
832
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
0
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0
replies
832
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
0
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1
reply
832
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
0
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2
replies
832
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
0
votes
1
reply
832
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
5
votes
10
replies
832
views
Different number of reads when converting data from FASTQ to BAM and CRAM to FASTQ
picard
6 months ago by ManuelDB ▴ 80
0
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0
replies
704
views
Comment: Comment: FASTQ to BAM to CRAM to FASTQ
6 months ago by ManuelDB ▴ 80
0
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0
replies
37k
views
Comment: Comment: installing samtools with conda - overcoming two common errors
6 months ago by ManuelDB ▴ 80
0
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0
replies
21k
views
Comment: Comment: How To Efficiently Sort A Fastq File By Entry Id?
6 months ago by ManuelDB ▴ 80
5
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4
replies
704
views
FASTQ to BAM to CRAM to FASTQ
Samtools
6 months ago by ManuelDB ▴ 80
0
votes
4
replies
1.4k
views
Cannot read non-existent file: when executing MarkDuplicates in a script
GATK4
updated 6 months ago by • 0 • written 2.1 years ago by ▴ 80
0
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0
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242
views
ERROR::INVALID_ALIGNMENT_START Alignment start should be 0 because reference name = *.
Pysam ValidateSamFile
6 months ago by ManuelDB ▴ 80
0
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0
replies
545
views
Comment: Comment: How to deal with reads which CIGAR is [0-9]+S
6 months ago by ManuelDB ▴ 80
1
vote
3
replies
545
views
How to deal with reads which CIGAR is [0-9]+S
CIGAR ampliconclip
updated 6 months ago by ★ 1.4k • written 6 months ago by ▴ 80
0
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0
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992
views
Comment: Comment: Liftover GRCh37 to hg38 1kg/GATK.
7 months ago by ManuelDB ▴ 80
3
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2
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992
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Liftover GRCh37 to hg38 1kg/GATK.
Liftover
7 months ago by ManuelDB ▴ 80
0
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0
replies
663
views
Comment: Comment: samtools ampliconclip option --strand is not working?
8 months ago by ManuelDB ▴ 80
5
votes
2
replies
663
views
samtools ampliconclip option --strand is not working?
samtools ampliconclip
8 months ago by ManuelDB ▴ 80
1
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0
replies
954
views
Comment: Comment: How is the format of the bed file for samtools ampliconclip
8 months ago by ManuelDB ▴ 80
0
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1
reply
954
views
Comment: Comment: How is the format of the bed file for samtools ampliconclip
8 months ago by ManuelDB ▴ 80
4
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7
replies
954
views
How is the format of the bed file for samtools ampliconclip
samtools ampliconclip
updated 8 months ago by ▴ 270 • written 8 months ago by ▴ 80
1
vote
1
reply
435
views
How to mark as QC fail reads with specific CIGARs
BAM PISCES
updated 8 months ago by 100k • written 8 months ago by ▴ 80
5
votes
3
replies
805
views
Why do the same genetic variants sometimes result in different amino acids in the REVEL table?
REVEL
updated 8 months ago by 4.2k • written 8 months ago by ▴ 80
0
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0
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404
views
Pisces doesn't like high-quality reads when there is a soft-clip affecting the full read.
Pisces
updated 8 months ago by 87k • written 8 months ago by ▴ 80
0
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0
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312
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Error processing chr 'chr7': Failed to process variants for MN01972:49:000H5KYMY:1:11102:26356:2968
PISCES
8 months ago by ManuelDB ▴ 80
9
votes
13
replies
1.4k
views
From primers sequence to Bed file
bedtools bwa
9 months ago by ManuelDB ▴ 80
1
vote
0
replies
1.4k
views
Answer: Answer: From primers sequence to Bed file
9 months ago by ManuelDB ▴ 80
0
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0
replies
1.4k
views
Comment: Comment: From primers sequence to Bed file
9 months ago by ManuelDB ▴ 80
0
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1
reply
1.4k
views
Comment: Comment: From primers sequence to Bed file
9 months ago by ManuelDB ▴ 80
0
votes
1
reply
1.4k
views
Comment: Comment: From primers sequence to Bed file
9 months ago by ManuelDB ▴ 80
0
votes
1
reply
1.4k
views
Comment: Comment: From primers sequence to Bed file
9 months ago by ManuelDB ▴ 80
0
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0
replies
1.4k
views
Comment: Comment: From primers sequence to Bed file
9 months ago by ManuelDB ▴ 80
2
votes
2
replies
590
views
I don't really understand what fold mean means
coverage
updated 11 months ago by 43k • written 11 months ago by ▴ 80
1
vote
0
replies
439
views
News: Good bioinformatics training resources
NGS
updated 11 months ago by 161k • written 11 months ago by ▴ 80
5
votes
9
replies
1.7k
views
6 follow
Count regions that overlap with python
CNV
updated 21 months ago by 35k • written 21 months ago by ▴ 80
0
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0
replies
1.7k
views
Answer: Answer: Count regions that overlap with python
21 months ago by ManuelDB ▴ 80
0
votes
1
reply
1.7k
views
Comment: Comment: Count regions that overlap with python
21 months ago by ManuelDB ▴ 80
0
votes
0
replies
1.7k
views
Comment: Comment: Count regions that overlap with python
21 months ago by ManuelDB ▴ 80
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