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0
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1
reply
237
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PEAR seems to have sense to me
PEAR
updated 9 weeks ago by 142k • written 9 weeks ago by ▴ 80
0
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0
replies
157
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MultiGemini is not doing indel realignment, right?? Gemini does't work with single read?
MultiGemini
3 months ago by ManuelDB ▴ 80
0
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0
replies
668
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Comment: Comment: 1 Bioinformatician position in San Sebastian (Spain)
3 months ago by ManuelDB ▴ 80
0
votes
0
replies
232
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Comment: Comment: FastaAlternateReferenceMaker merges overlapping regions
3 months ago by ManuelDB ▴ 80
0
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1
reply
232
views
FastaAlternateReferenceMaker merges overlapping regions
FastaAlternateReferenceMaker
updated 3 months ago by 44k • written 3 months ago by ▴ 80
0
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0
replies
512
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Comment: Comment: CIGAR and query sequence lengths differ
5 months ago by ManuelDB ▴ 80
0
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0
replies
512
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Comment: Comment: CIGAR and query sequence lengths differ
5 months ago by ManuelDB ▴ 80
1
vote
3
replies
512
views
CIGAR and query sequence lengths differ
pysam samtools
5 months ago by ManuelDB ▴ 80
1
vote
1
reply
400
views
How to properly mock a (Pysam) read
pysam
updated 5 months ago by 100k • written 5 months ago by ▴ 80
2
votes
1
reply
446
views
Issue softclipping reads when they belong and don't belong to a common amplicon
Samtools softclip
updated 5 months ago by ▴ 310 • written 5 months ago by ▴ 80
1
vote
1
reply
297
views
Two identical reads in my bam files but with a different in CIGAR are mapped in a different location in IGV
pysam
5 months ago by ManuelDB ▴ 80
1
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0
replies
297
views
Answer: Answer: Two identical reads in my bam files but with a different in CIGAR are mapped in
5 months ago by ManuelDB ▴ 80
0
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0
replies
864
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Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
0
votes
0
replies
864
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
0
votes
1
reply
864
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
0
votes
2
replies
864
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
0
votes
1
reply
864
views
Comment: Comment: Different number of reads when converting data from FASTQ to BAM and CRAM to FAS
6 months ago by ManuelDB ▴ 80
5
votes
10
replies
864
views
Different number of reads when converting data from FASTQ to BAM and CRAM to FASTQ
picard
6 months ago by ManuelDB ▴ 80
0
votes
0
replies
760
views
Comment: Comment: FASTQ to BAM to CRAM to FASTQ
6 months ago by ManuelDB ▴ 80
0
votes
0
replies
37k
views
Comment: Comment: installing samtools with conda - overcoming two common errors
7 months ago by ManuelDB ▴ 80
0
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0
replies
21k
views
Comment: Comment: How To Efficiently Sort A Fastq File By Entry Id?
7 months ago by ManuelDB ▴ 80
5
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4
replies
760
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FASTQ to BAM to CRAM to FASTQ
Samtools
6 months ago by ManuelDB ▴ 80
0
votes
4
replies
1.5k
views
Cannot read non-existent file: when executing MarkDuplicates in a script
GATK4
updated 7 months ago by • 0 • written 2.2 years ago by ▴ 80
0
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0
replies
251
views
ERROR::INVALID_ALIGNMENT_START Alignment start should be 0 because reference name = *.
Pysam ValidateSamFile
7 months ago by ManuelDB ▴ 80
0
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0
replies
561
views
Comment: Comment: How to deal with reads which CIGAR is [0-9]+S
7 months ago by ManuelDB ▴ 80
1
vote
3
replies
561
views
How to deal with reads which CIGAR is [0-9]+S
CIGAR ampliconclip
updated 7 months ago by ★ 1.4k • written 7 months ago by ▴ 80
0
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0
replies
1.1k
views
Comment: Comment: Liftover GRCh37 to hg38 1kg/GATK.
8 months ago by ManuelDB ▴ 80
4
votes
2
replies
1.1k
views
Liftover GRCh37 to hg38 1kg/GATK.
Liftover
8 months ago by ManuelDB ▴ 80
0
votes
0
replies
680
views
Comment: Comment: samtools ampliconclip option --strand is not working?
8 months ago by ManuelDB ▴ 80
5
votes
2
replies
680
views
samtools ampliconclip option --strand is not working?
samtools ampliconclip
8 months ago by ManuelDB ▴ 80
1
vote
0
replies
984
views
Comment: Comment: How is the format of the bed file for samtools ampliconclip
8 months ago by ManuelDB ▴ 80
0
votes
1
reply
984
views
Comment: Comment: How is the format of the bed file for samtools ampliconclip
8 months ago by ManuelDB ▴ 80
4
votes
7
replies
984
views
How is the format of the bed file for samtools ampliconclip
samtools ampliconclip
updated 8 months ago by ▴ 310 • written 8 months ago by ▴ 80
1
vote
1
reply
444
views
How to mark as QC fail reads with specific CIGARs
BAM PISCES
updated 9 months ago by 100k • written 9 months ago by ▴ 80
5
votes
3
replies
831
views
Why do the same genetic variants sometimes result in different amino acids in the REVEL table?
REVEL
updated 9 months ago by 4.2k • written 9 months ago by ▴ 80
0
votes
0
replies
413
views
Pisces doesn't like high-quality reads when there is a soft-clip affecting the full read.
Pisces
updated 9 months ago by 88k • written 9 months ago by ▴ 80
0
votes
0
replies
320
views
Error processing chr 'chr7': Failed to process variants for MN01972:49:000H5KYMY:1:11102:26356:2968
PISCES
9 months ago by ManuelDB ▴ 80
9
votes
13
replies
1.5k
views
From primers sequence to Bed file
bedtools bwa
10 months ago by ManuelDB ▴ 80
1
vote
0
replies
1.5k
views
Answer: Answer: From primers sequence to Bed file
10 months ago by ManuelDB ▴ 80
0
votes
0
replies
1.5k
views
Comment: Comment: From primers sequence to Bed file
10 months ago by ManuelDB ▴ 80
0
votes
1
reply
1.5k
views
Comment: Comment: From primers sequence to Bed file
10 months ago by ManuelDB ▴ 80
0
votes
1
reply
1.5k
views
Comment: Comment: From primers sequence to Bed file
10 months ago by ManuelDB ▴ 80
0
votes
1
reply
1.5k
views
Comment: Comment: From primers sequence to Bed file
10 months ago by ManuelDB ▴ 80
0
votes
0
replies
1.5k
views
Comment: Comment: From primers sequence to Bed file
10 months ago by ManuelDB ▴ 80
2
votes
2
replies
603
views
I don't really understand what fold mean means
coverage
updated 11 months ago by 44k • written 11 months ago by ▴ 80
1
vote
0
replies
445
views
News: Good bioinformatics training resources
NGS
updated 11 months ago by 162k • written 11 months ago by ▴ 80
5
votes
9
replies
1.7k
views
6 follow
Count regions that overlap with python
CNV
updated 22 months ago by 35k • written 22 months ago by ▴ 80
0
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0
replies
1.7k
views
Answer: Answer: Count regions that overlap with python
22 months ago by ManuelDB ▴ 80
0
votes
1
reply
1.7k
views
Comment: Comment: Count regions that overlap with python
22 months ago by ManuelDB ▴ 80
0
votes
0
replies
1.7k
views
Comment: Comment: Count regions that overlap with python
22 months ago by ManuelDB ▴ 80
132 results • Page 1 of 3
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