Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
1
reply
545
views
Do we have any disease specific SNVs database?
cancer
mutation
SNP
SNV
database
updated 14 months ago by
Medhat
9.7k • written 14 months ago by
Nemo
• 0
1
vote
2
replies
578
views
How should I interpret FB_Plot in microarray analysis?
microarray
analysis
control
quality
updated 15 months ago by
Ram
43k • written 15 months ago by
Nemo
• 0
0
votes
6
replies
976
views
zero byte files in sratoolkit.3.0.1-ubuntu64
fastq
sra-toolkit
rna-seq
updated 15 months ago by
Ngrin
• 0 • written 15 months ago by
Nemo
• 0
7
votes
4
replies
1.0k
views
Processed RNA seq data publicly available
RNA-seq
updated 15 months ago by
Ram
43k • written 16 months ago by
Nemo
• 0
0
votes
3
replies
746
views
Combining multiple datasets increases the fgsea p-value
enrichment
fgsea
dataset
updated 17 months ago by
mark.ziemann
★ 1.9k • written 17 months ago by
Nemo
• 0
0
votes
0
replies
746
views
Comment:
Comment: Combining multiple datasets increases the fgsea p-value
17 months ago by
Nemo
• 0
0
votes
1
reply
636
views
Comment:
Comment: What is the default/best practice to map prob IDs to gene IDs
17 months ago by
Nemo
• 0
2
votes
3
replies
636
views
What is the default/best practice to map prob IDs to gene IDs
gsea
map
gene
prob
updated 17 months ago by
barslmn
★ 2.1k • written 17 months ago by
Nemo
• 0
2
votes
2
replies
608
views
Question regarding pathways and cell types
signaling
types
cell
pathway
updated 17 months ago by
LauferVA
4.2k • written 17 months ago by
Nemo
• 0
0
votes
0
replies
677
views
Comment:
Comment: predict gain/ loss of function from mutation
18 months ago by
Nemo
• 0
0
votes
1
reply
677
views
Comment:
Comment: predict gain/ loss of function from mutation
18 months ago by
Nemo
• 0
0
votes
3
replies
677
views
predict gain/ loss of function from mutation
protein
mutation
loss
gain
18 months ago by
Nemo
• 0
2
votes
1
reply
532
views
Get variant type from genotype data
type
missense
mutation
nonsense
variant
updated 18 months ago by
Sam
★ 4.7k • written 18 months ago by
Nemo
• 0
0
votes
1
reply
749
views
Comment:
Comment: Htseq-count output file having a high number of __not_aligned
20 months ago by
Nemo
• 0
0
votes
3
replies
749
views
Htseq-count output file having a high number of __not_aligned
read
htseq-count
human
counts
genome
alignment
updated 20 months ago by
Shred
★ 1.4k • written 20 months ago by
Nemo
• 0
0
votes
0
replies
271
views
The region for RNase P gene in human genome
gene
genome
read
count
20 months ago by
Nemo
• 0
0
votes
1
reply
437
views
How parse collectReadCounts output in r?
CollectReadCounts
r
gatk
rstudio
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
Nemo
• 0
0
votes
0
replies
763
views
Comment:
Comment: Get distribution of enrichment scores across all permutations in fgsea
20 months ago by
Nemo
• 0
3
votes
1
reply
485
views
aligning RNA seq data against human genome
variant
calling
rna-seq
alignment
updated 20 months ago by
GenoMax
142k • written 20 months ago by
Nemo
• 0
0
votes
1
reply
763
views
Comment:
Comment: Get distribution of enrichment scores across all permutations in fgsea
20 months ago by
Nemo
• 0
0
votes
3
replies
763
views
Get distribution of enrichment scores across all permutations in fgsea
enrichment
gsea
pathway
analysis
fgsea
permutation
20 months ago by
Nemo
• 0
0
votes
1
reply
560
views
Normalizing read counts while having multiple group of samples with different conditions
FPKM
normalizing
rna-seq
read-count
alignment
updated 20 months ago by
seidel
11k • written 20 months ago by
Nemo
• 0
0
votes
0
replies
468
views
Comment:
Comment: Normalized read counts with FPKM
20 months ago by
Nemo
• 0
0
votes
1
reply
468
views
Normalized read counts with FPKM
Read
FPKM
Normalize
count
RNA-Sequnce
20 months ago by
Nemo
• 0
0
votes
1
reply
579
views
Comment:
Comment: How can I get the number of reads per variant in hisat2?
21 months ago by
Nemo
• 0
1
vote
3
replies
579
views
How can I get the number of reads per variant in hisat2?
alignemnt
variant
gatk
covid
hisat2
updated 21 months ago by
Arup Ghosh
3.2k • written 21 months ago by
Nemo
• 0
0
votes
1
reply
745
views
Comment:
Comment: What is chrom and position values in Wuhan-Hu-1 genome data
21 months ago by
Nemo
• 0
2
votes
3
replies
745
views
What is chrom and position values in Wuhan-Hu-1 genome data
alignemnt
variant
gatk
covid
hisat2
updated 21 months ago by
GenoMax
142k • written 21 months ago by
Nemo
• 0
0
votes
0
replies
920
views
Comment:
Comment: Why there are variants of covid (delta and omicron) in normal samples?
21 months ago by
Nemo
• 0
0
votes
1
reply
920
views
Comment:
Comment: Why there are variants of covid (delta and omicron) in normal samples?
21 months ago by
Nemo
• 0
0
votes
1
reply
920
views
Comment:
Comment: Why there are variants of covid (delta and omicron) in normal samples?
21 months ago by
Nemo
• 0
1
vote
6
replies
920
views
Why there are variants of covid (delta and omicron) in normal samples?
alignemnt
variant
gatk
covid
hisat2
21 months ago by
Nemo
• 0
0
votes
1
reply
1.1k
views
Comment:
Comment: What is --known-sites in BaseRecalibration of GATK
21 months ago by
Nemo
• 0
0
votes
1
reply
1.1k
views
Comment:
Comment: What is --known-sites in BaseRecalibration of GATK
21 months ago by
Nemo
• 0
0
votes
5
replies
1.1k
views
What is --known-sites in BaseRecalibration of GATK
rna-seq
gatk
variants
site
baserecalibration
updated 21 months ago by
Arup Ghosh
3.2k • written 21 months ago by
Nemo
• 0
2
votes
1
reply
688
views
Can MarkDuplicates of Picard be used for RNA reads?
variants
MarkDuplicates
rna
picard
updated 21 months ago by
LChart
3.9k • written 21 months ago by
Nemo
• 0
1
vote
1
reply
700
views
Problem in MarkDuplicates of picard
variants
MarkDuplicates
picard
rna
updated 21 months ago by
Pierre Lindenbaum
161k • written 21 months ago by
Nemo
• 0
0
votes
1
reply
1.1k
views
Comment:
Comment: using gatk haplotypecaller for variants extraction
21 months ago by
Nemo
• 0
0
votes
3
replies
1.1k
views
using gatk haplotypecaller for variants extraction
variants
gatk
haplotypecaller
rna-seq
updated 21 months ago by
Ram
43k • written 21 months ago by
Nemo
• 0
0
votes
0
replies
666
views
Comment:
Comment: Splice aware or not for RNA sequence data
21 months ago by
Nemo
• 0
1
vote
2
replies
666
views
Splice aware or not for RNA sequence data
splice
RNA
hisat2
sequence
alignment
21 months ago by
Nemo
• 0
0
votes
0
replies
356
views
CalibrateDragstrModel - Not enough cases to estimate parameters, using defaults
dragen-os
calibration
gatk
dragen
alignment
21 months ago by
Nemo
• 0
0
votes
0
replies
391
views
Control detected variants for normal samples in dragen
calling
illumina
variants
dragen
alignment
21 months ago by
Nemo
• 0
0
votes
9
replies
1.9k
views
Not producing sam file in hisat2
sam
hisat2
header
alignment
updated 20 months ago by
Ambu Vijayan
▴ 30 • written 21 months ago by
Nemo
• 0
0
votes
0
replies
1.9k
views
Answer:
Answer: Not producing sam file in hisat2
21 months ago by
Nemo
• 0
0
votes
1
reply
1.9k
views
Comment:
Comment: Not producing sam file in hisat2
21 months ago by
Nemo
• 0
0
votes
0
replies
1.9k
views
Comment:
Comment: Not producing sam file in hisat2
21 months ago by
Nemo
• 0
0
votes
0
replies
1.5k
views
Comment:
Comment: Adding @RG header line to bam and sam files in hisat2
21 months ago by
Nemo
• 0
0
votes
1
reply
1.9k
views
Comment:
Comment: Not producing sam file in hisat2
21 months ago by
Nemo
• 0
0
votes
1
reply
1.5k
views
Comment:
Comment: Adding @RG header line to bam and sam files in hisat2
21 months ago by
Nemo
• 0
64 results • Page
1 of 2
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6