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Comment: Comment: How to compare the quality of assemblies
14 months ago by kirillkirilenko ▴ 40
5
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4
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1.8k
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How to compare the quality of assemblies
nextdenovo assembly hifiasm pacbio
14 months ago by kirillkirilenko ▴ 40
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1
reply
806
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Obtain satellite DNA monomer from dot plot
repeats satellites dot-plot
updated 18 months ago by ★ 1.6k • written 18 months ago by ▴ 40
2
votes
1
reply
656
views
Shorten Illumina reads
RepeatExplorer2 Illumina paired-end
updated 19 months ago by 20k • written 19 months ago by ▴ 40
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0
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1.1k
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Comment: Comment: Estimate Genome Size
19 months ago by kirillkirilenko ▴ 40
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1
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1.1k
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Comment: Comment: Estimate Genome Size
19 months ago by kirillkirilenko ▴ 40
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4
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1.1k
views
Estimate Genome Size
jellyfish genome k-mer
19 months ago by kirillkirilenko ▴ 40
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0
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1.1k
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Comment: Comment: Detect STRs in illumina library
20 months ago by kirillkirilenko ▴ 40
1
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4
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1.1k
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Detect STRs in illumina library
repeats annotation STR
20 months ago by kirillkirilenko ▴ 40
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0
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1.1k
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Comment: Comment: Detect STRs in illumina library
21 months ago by kirillkirilenko ▴ 40
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0
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1.3k
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Comment: Comment: Make a BedGraph file
2.0 years ago by kirillkirilenko ▴ 40
3
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3
replies
1.3k
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Make a BedGraph file
BedGraph RepeatMasker BED
2.0 years ago by kirillkirilenko ▴ 40
3
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2
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1.2k
views
Choosing right statistical test in genomics
repeats genomics annotation statistics bed
updated 2.4 years ago by 27k • written 2.4 years ago by ▴ 40
0
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0
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661
views
Metagenome analysis on EPI2ME ONT
metagenomics ONT 16S longreads
2.5 years ago by kirillkirilenko ▴ 40
0
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0
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1.6k
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Comment: Comment: Show genome coverage in IGV-browser
2.6 years ago by kirillkirilenko ▴ 40
1
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0
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1.5k
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Comment: Comment: Determine type of mutation
2.6 years ago by kirillkirilenko ▴ 40
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1
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1.5k
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Comment: Comment: Determine type of mutation
2.6 years ago by kirillkirilenko ▴ 40
4
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4
replies
1.5k
views
Determine type of mutation
hisat2 alignment annotation
2.6 years ago by kirillkirilenko ▴ 40
0
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0
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1.6k
views
Comment: Comment: Show genome coverage in IGV-browser
2.6 years ago by kirillkirilenko ▴ 40
0
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1
reply
1.6k
views
Comment: Comment: Show genome coverage in IGV-browser
2.6 years ago by kirillkirilenko ▴ 40
0
votes
5
replies
1.6k
views
Show genome coverage in IGV-browser
assembly annotation igv
2.6 years ago by kirillkirilenko ▴ 40
0
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1
reply
1.8k
views
Comment: Comment: Variant calling lost variant
2.6 years ago by kirillkirilenko ▴ 40
0
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1
reply
1.8k
views
Comment: Comment: Variant calling lost variant
2.6 years ago by kirillkirilenko ▴ 40
2
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7
replies
1.8k
views
Variant calling lost variant
bcftools samtools variant-calling alignment
updated 2.6 years ago by ★ 1.3k • written 2.7 years ago by ▴ 40
0
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1
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1.8k
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Comment: Comment: Variant calling lost variant
2.6 years ago by kirillkirilenko ▴ 40
0
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1
reply
782
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Find breakpoints using long reads
alignment nanopore samtools
2.7 years ago by kirillkirilenko ▴ 40
0
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1
reply
969
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Comment: Comment: Construct a phylogenetic tree of apes
2.8 years ago by kirillkirilenko ▴ 40
0
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3
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969
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Construct a phylogenetic tree of apes
phylogenetics msa
updated 2.8 years ago by ★ 1.5k • written 2.8 years ago by ▴ 40
0
votes
1
reply
866
views
Create library of TEs de novo
TEs DNA repetitive annotation
updated 2.8 years ago by 15k • written 2.8 years ago by ▴ 40
1
vote
1
reply
653
views
Convert mpileup file into dataframe
variant-calling samtools bcftools
updated 2.0 years ago by 45k • written 2.9 years ago by ▴ 40
0
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0
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2.0k
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Comment: Comment: What are rnd families predicted by RepeatModeler?
2.9 years ago by kirillkirilenko ▴ 40
0
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0
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684
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Classify unknown TEs produced by RepeatModeler
repeats TE genome
2.9 years ago by kirillkirilenko ▴ 40
0
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0
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1.9k
views
Comment: Comment: Align short sequence against ONT reads
3.0 years ago by kirillkirilenko ▴ 40
0
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1
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1.9k
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Comment: Comment: Align short sequence against ONT reads
3.0 years ago by kirillkirilenko ▴ 40
1
vote
5
replies
1.9k
views
Align short sequence against ONT reads
long-reads ONT alignment genome
updated 14 months ago by 45k • written 3.0 years ago by ▴ 40
0
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0
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1.7k
views
Comment: Comment: Error executing process > consensus_classification in NanoCLUST
3.1 years ago by kirillkirilenko ▴ 40
0
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0
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2.1k
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Comment: Comment: Augustus output
3.1 years ago by kirillkirilenko ▴ 40
0
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1
reply
2.1k
views
Comment: Comment: Augustus output
3.1 years ago by kirillkirilenko ▴ 40
3
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5
replies
2.1k
views
Augustus output
annotation augustus
updated 3.1 years ago by 9.2k • written 3.1 years ago by ▴ 40
0
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1
reply
753
views
How to examine .hic files from Hi-C analysis?
Hi-C 3D-genome
updated 3.1 years ago by 152k • written 3.1 years ago by ▴ 40
0
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0
replies
2.1k
views
Comment: Comment: How to parse RepeatMasker output
3.2 years ago by kirillkirilenko ▴ 40
1
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3
replies
2.1k
views
How to parse RepeatMasker output
bash python RepeatMasker
updated 3.2 years ago by 55k • written 3.2 years ago by ▴ 40
3
votes
3
replies
3.0k
views
Perl modules for RepeatModeler
RepeatModeler Perl
updated 3.2 years ago by 55k • written 3.3 years ago by ▴ 40
2
votes
5
replies
4.8k
views
Demultiplexing nanopore reads
demultiplexing ONT barcodes
updated 2.8 years ago by ★ 2.7k • written 3.6 years ago by ▴ 40
2
votes
3
replies
2.1k
views
Nanopore metagenomics analysis
ONT metagenomics microbiome
updated 3.7 years ago by ▴ 420 • written 3.7 years ago by ▴ 40
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