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Showing :
questions
5
votes
4
replies
626
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
2 days ago by
kirillkirilenko
▴ 40
0
votes
1
reply
451
views
Obtain satellite DNA monomer from dot plot
repeats
satellites
dot-plot
updated 4 months ago by
shelkmike
★ 1.2k • written 4 months ago by
kirillkirilenko
▴ 40
2
votes
1
reply
337
views
Shorten Illumina reads
RepeatExplorer2
Illumina
paired-end
updated 5 months ago by
Brian Bushnell
20k • written 5 months ago by
kirillkirilenko
▴ 40
0
votes
4
replies
560
views
Estimate Genome Size
jellyfish
genome
k-mer
5 months ago by
kirillkirilenko
▴ 40
1
vote
4
replies
696
views
Detect STRs in illumina library
repeats
annotation
STR
6 months ago by
kirillkirilenko
▴ 40
3
votes
3
replies
882
views
Make a BedGraph file
BedGraph
RepeatMasker
BED
10 months ago by
kirillkirilenko
▴ 40
3
votes
2
replies
675
views
Choosing right statistical test in genomics
repeats
genomics
annotation
statistics
bed
updated 15 months ago by
Jean-Karim Heriche
27k • written 15 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
429
views
Metagenome analysis on EPI2ME ONT
metagenomics
ONT
16S
longreads
15 months ago by
kirillkirilenko
▴ 40
4
votes
4
replies
1.1k
views
Determine type of mutation
hisat2
alignment
annotation
17 months ago by
kirillkirilenko
▴ 40
0
votes
5
replies
1.0k
views
Show genome coverage in IGV-browser
assembly
annotation
igv
17 months ago by
kirillkirilenko
▴ 40
2
votes
7
replies
1.2k
views
Variant calling lost variant
bcftools
samtools
variant-calling
alignment
updated 18 months ago by
jkbonfield
★ 1.2k • written 18 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
575
views
Find breakpoints using long reads
alignment
nanopore
samtools
19 months ago by
kirillkirilenko
▴ 40
0
votes
3
replies
625
views
Construct a phylogenetic tree of apes
phylogenetics
msa
updated 19 months ago by
liorglic
★ 1.4k • written 19 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
517
views
Create library of TEs de novo
TEs
DNA
repetitive
annotation
updated 20 months ago by
lieven.sterck
15k • written 20 months ago by
kirillkirilenko
▴ 40
1
vote
1
reply
469
views
Convert mpileup file into dataframe
variant-calling
samtools
bcftools
updated 10 months ago by
Ram
43k • written 20 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
417
views
Classify unknown TEs produced by RepeatModeler
repeats
TE
genome
20 months ago by
kirillkirilenko
▴ 40
1
vote
5
replies
1.0k
views
Align short sequence against ONT reads
long-reads
ONT
alignment
genome
updated 21 days ago by
Ram
43k • written 22 months ago by
kirillkirilenko
▴ 40
3
votes
5
replies
1.3k
views
Augustus output
annotation
augustus
updated 23 months ago by
Juke34
8.5k • written 23 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
465
views
How to examine .hic files from Hi-C analysis?
Hi-C
3D-genome
updated 24 months ago by
GenoMax
141k • written 24 months ago by
kirillkirilenko
▴ 40
1
vote
3
replies
1.5k
views
How to parse RepeatMasker output
bash
python
RepeatMasker
updated 2.0 years ago by
Michael
54k • written 2.0 years ago by
kirillkirilenko
▴ 40
3
votes
3
replies
2.0k
views
Perl modules for RepeatModeler
RepeatModeler
Perl
updated 2.1 years ago by
Michael
54k • written 2.1 years ago by
kirillkirilenko
▴ 40
2
votes
5
replies
3.6k
views
Demultiplexing nanopore reads
demultiplexing
ONT
barcodes
updated 20 months ago by
Prakki Rama
★ 2.7k • written 2.5 years ago by
kirillkirilenko
▴ 40
2
votes
3
replies
1.7k
views
Nanopore metagenomics analysis
ONT
metagenomics
microbiome
updated 2.6 years ago by
Chris Dean
▴ 390 • written 2.6 years ago by
kirillkirilenko
▴ 40
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