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Showing :
questions
5
votes
4
replies
996
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
4 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
564
views
Obtain satellite DNA monomer from dot plot
repeats
satellites
dot-plot
updated 8 months ago by
shelkmike
★ 1.3k • written 9 months ago by
kirillkirilenko
▴ 40
2
votes
1
reply
423
views
Shorten Illumina reads
RepeatExplorer2
Illumina
paired-end
updated 9 months ago by
Brian Bushnell
20k • written 9 months ago by
kirillkirilenko
▴ 40
0
votes
4
replies
763
views
Estimate Genome Size
jellyfish
genome
k-mer
10 months ago by
kirillkirilenko
▴ 40
1
vote
4
replies
819
views
Detect STRs in illumina library
repeats
annotation
STR
10 months ago by
kirillkirilenko
▴ 40
3
votes
3
replies
1.0k
views
Make a BedGraph file
BedGraph
RepeatMasker
BED
15 months ago by
kirillkirilenko
▴ 40
3
votes
2
replies
799
views
Choosing right statistical test in genomics
repeats
genomics
annotation
statistics
bed
updated 19 months ago by
Jean-Karim Heriche
27k • written 19 months ago by
kirillkirilenko
▴ 40
0
votes
0
replies
498
views
Metagenome analysis on EPI2ME ONT
metagenomics
ONT
16S
longreads
20 months ago by
kirillkirilenko
▴ 40
4
votes
4
replies
1.2k
views
Determine type of mutation
hisat2
alignment
annotation
21 months ago by
kirillkirilenko
▴ 40
0
votes
5
replies
1.2k
views
Show genome coverage in IGV-browser
assembly
annotation
igv
21 months ago by
kirillkirilenko
▴ 40
2
votes
7
replies
1.3k
views
Variant calling lost variant
bcftools
samtools
variant-calling
alignment
updated 22 months ago by
jkbonfield
★ 1.3k • written 22 months ago by
kirillkirilenko
▴ 40
0
votes
1
reply
648
views
Find breakpoints using long reads
alignment
nanopore
samtools
23 months ago by
kirillkirilenko
▴ 40
0
votes
3
replies
725
views
Construct a phylogenetic tree of apes
phylogenetics
msa
updated 2.0 years ago by
liorglic
★ 1.4k • written 2.0 years ago by
kirillkirilenko
▴ 40
0
votes
1
reply
593
views
Create library of TEs de novo
TEs
DNA
repetitive
annotation
updated 2.1 years ago by
lieven.sterck
15k • written 2.1 years ago by
kirillkirilenko
▴ 40
1
vote
1
reply
532
views
Convert mpileup file into dataframe
variant-calling
samtools
bcftools
updated 14 months ago by
Ram
44k • written 2.1 years ago by
kirillkirilenko
▴ 40
0
votes
0
replies
507
views
Classify unknown TEs produced by RepeatModeler
repeats
TE
genome
2.1 years ago by
kirillkirilenko
▴ 40
1
vote
5
replies
1.3k
views
Align short sequence against ONT reads
long-reads
ONT
alignment
genome
updated 5 months ago by
Ram
44k • written 2.2 years ago by
kirillkirilenko
▴ 40
3
votes
5
replies
1.6k
views
Augustus output
annotation
augustus
updated 2.3 years ago by
Juke34
8.7k • written 2.3 years ago by
kirillkirilenko
▴ 40
0
votes
1
reply
529
views
How to examine .hic files from Hi-C analysis?
Hi-C
3D-genome
updated 2.4 years ago by
GenoMax
145k • written 2.4 years ago by
kirillkirilenko
▴ 40
1
vote
3
replies
1.7k
views
How to parse RepeatMasker output
bash
python
RepeatMasker
updated 2.4 years ago by
Michael
55k • written 2.4 years ago by
kirillkirilenko
▴ 40
3
votes
3
replies
2.3k
views
Perl modules for RepeatModeler
RepeatModeler
Perl
updated 2.5 years ago by
Michael
55k • written 2.5 years ago by
kirillkirilenko
▴ 40
2
votes
5
replies
3.9k
views
Demultiplexing nanopore reads
demultiplexing
ONT
barcodes
updated 2.0 years ago by
Prakki Rama
★ 2.7k • written 2.8 years ago by
kirillkirilenko
▴ 40
2
votes
3
replies
1.8k
views
Nanopore metagenomics analysis
ONT
metagenomics
microbiome
updated 2.9 years ago by
Chris Dean
▴ 410 • written 2.9 years ago by
kirillkirilenko
▴ 40
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