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Comment: Using metagenome assembly and binning to identify and mitigate contamination in
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It's not a silly question! And yes, it can be done. JGI is currently testing various binning tools to try to find the best protocol for t…
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[We have this in our FAQ][1]. PANTHER version 18.0, which powers the enrichment analysis on our homepage, has [143 species][2] loaded and …
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Thanks for the feedback fellas! I agree with the aforementioned!
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i collect a large list of tools for visualization, some are specialized for SVs and re-arrangements. you can filter by tag (SV, CNV, compar…
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If variants overlap in the genome, `vg deconstruct` will combine them into one locus with multiple alleles. If your input VCF has a lot of …
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You can use `vg find -P` for this. This command is not really designed to be used frequently throughout the genome (each invocation loads t…
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I would just draw them in by hand where you want them.
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I know that CpG types can be identified using whole genome bisulphite data. But could it be possible using MeDIP data too?
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some common ones include
1000 genomes vcf (large, multi-sample) http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/
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Thanks Istvan for your reply. I think these programs will do the same as Trinotate. Trinotate searches against numerous databases and gener…
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And the hg38 version can be found here:
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And for convenience, upda…
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You added a position dodge on your boxplot but not on your points.
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Please understand that biostars is not a helpdesk for trivial ggplot questions. Google it and find help on previous StackExchange sites, or…
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