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188 results • Page
3 of 4
Sort: Votes
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Views
Votes
Replies
0
votes
0
replies
20
views
Significance of several BUSCO target IDs for the same gene
target_id
sequence-ontology
BUSCO
duplication
1 hour ago by
CoLa
• 0
0
votes
1
reply
56
views
doubt about usage of megahit
trinity
megahit
updated 50 minutes ago by
Istvan Albert
99k • written 7 hours ago by
meera
• 0
0
votes
1
reply
90
views
GO categorization
Ontology
Gene
updated 37 minutes ago by
Istvan Albert
99k • written 17 hours ago by
m.habib
• 0
0
votes
4
replies
110
views
Problematic fastq files...How can we trust them?
fastq
updated 16 minutes ago by
Istvan Albert
99k • written 4 hours ago by
blackadder
▴ 30
0
votes
0
replies
10
views
How to identify CG, CHG, or CHH from MeDIP data
CHG
software
CHH
CG
MeDIP
18 minutes ago by
Tm
★ 1.1k
0
votes
3
replies
302
views
Annovar - Annotated file cells show string
annovar
6 days ago by
Roshan
• 0
0
votes
0
replies
227
views
The number of variations in the pan-genome is reduced compared to the variations in the input VCF file
vg
6 days ago by
Wenke
• 0
0
votes
1
reply
245
views
MinKNOW software installation doubt for MinION Nanopore sequencing
MinKNOW
MinION
Nanopore
updated 6 days ago by
GenoMax
136k • written 7 days ago by
Soumajit
▴ 40
0
votes
0
replies
173
views
Tutorial:
Making Tile plots to show Synonymous Non-Synonymous mutation fraction
mutation
ggplotify
geom_tile
ggplot2
6 days ago by
rohitsatyam102
▴ 780
0
votes
3
replies
344
views
Alternatives to Music2 for rnaseq deconvolution without disease scRNA dataset
scRNA
deconvolution
Music
Music2
bulk
updated 6 days ago by
ATpoint
78k • written 6 days ago by
manuelmourato25
• 0
0
votes
1
reply
249
views
issue in RNA -seq analysis
NGS
RNA-Seq
updated 6 days ago by
GenoMax
136k • written 6 days ago by
subhiksha
• 0
0
votes
3
replies
322
views
subset a bam file
bam
pysam
NGS
samtools
updated 5 days ago by
GenoMax
136k • written 6 days ago by
Ming
• 0
0
votes
2
replies
273
views
Use of IDR after running MACS3 for ATAC-seq data
ATAC-seq
MACS2
MACS3
5 days ago by
Orange
▴ 10
0
votes
3
replies
374
views
Extracting list of identical items from several excel files
from
excel
items
Extract
file
updated 5 days ago by
DonPhager
• 0 • written 5 days ago by
otieno43
▴ 20
0
votes
0
replies
125
views
Negative F statistics for sex check in plink
plink
check
sex
5 days ago by
kl
▴ 10
0
votes
0
replies
113
views
[maftools]Too many multi_hit and missense mutation
maftools
gatk
MAF
data
WES
VCF
4 days ago by
jiazheng_lin
• 0
0
votes
3
replies
1.0k
views
Error with Ice normalization when running HiC-Pro
Hi-C
HiChIP
HiC-Pro
updated 4 days ago by
Cibo
• 0 • written 2.1 years ago by
Amina
• 0
0
votes
7
replies
328
views
snp database using annotation
database
gwas
snp
annotation
4 days ago by
sskimvd
• 0
0
votes
0
replies
105
views
addPatternDensity to qsea object
maxDensityPattern
medip
qsea
4 days ago by
Jaykishan
• 0
0
votes
7
replies
423
views
Issues while running htseq-count
Candida-glabrata
RNA-seq
htseq-count
4 days ago by
Foad
▴ 10
0
votes
0
replies
97
views
Differentiate sequenced and imputed variants in BGEN files
imputation
bgen
ukb
4 days ago by
user230613
▴ 350
0
votes
1
reply
184
views
multiple condition and time course in RNA-seq
edgeR
RNA-Seq
DESeq2
updated 4 days ago by
i.sudbery
18k • written 5 days ago by
tiancaigg
▴ 30
0
votes
2
replies
689
views
CPAT: error on coding probability cutoff
lncRNA
RNAseq
CPAT
updated 4 days ago by
catarinaventura_pt
• 0 • written 21 months ago by
xiaoxia8923
• 0
0
votes
2
replies
202
views
RnBeads mean difference vs M-values
Methylation
updated 4 days ago by
Basti
★ 1.9k • written 4 days ago by
a.basitkhan1990
▴ 30
0
votes
1
reply
161
views
Combine Geoids
Geoids
NCBI
updated 3 days ago by
ATpoint
78k • written 4 days ago by
anasjamshed
▴ 120
0
votes
4
replies
268
views
Species coverage in the NCBI protein NR database ?
NR
updated 3 days ago by
Istvan Albert
99k • written 4 days ago by
HERMAN
▴ 10
0
votes
1
reply
195
views
Chipseq peak calling and peak frequency region
chipseeker
macs2
updated 3 days ago by
Arup Ghosh
3.2k • written 5 days ago by
Mehwish
▴ 10
0
votes
2
replies
210
views
how to use pilon
genome
pipelines
assembly
pilon
contig
updated 3 days ago by
Arup Ghosh
3.2k • written 9 days ago by
vasudhapai
• 0
0
votes
1
reply
254
views
Diferences between TCGAbiolinks and cBioportal
R
TCGAbiolinks
cBioportal
updated 3 days ago by
Zhenyu Zhang
★ 1.1k • written 8 days ago by
jomagrax
▴ 40
0
votes
2
replies
222
views
using RSEM with non Trinity assembly
SPAdes
Trinity
RSEM
3 days ago by
jen
• 0
0
votes
0
replies
331
views
Job:
Postdoctoral Researcher in Alzheimer's disease Genetics, Multi-Omics, and Imaging Biomarkers, St Louis, MO, USA
Multi-Omics
Imaging
Alzheimer
Genetics
3 days ago by
belloy
• 0
0
votes
3
replies
4.0k
views
pheatmap lengends are being cutoff
pheatmap
legends
rstudio
heatmaps
updated 3 days ago by
Chris S.
▴ 320 • written 2.7 years ago by
enh
• 0
0
votes
0
replies
106
views
missing region in the process of annotation
annotatr
minfi
3 days ago by
Aki
▴ 10
0
votes
5
replies
537
views
Lack of correspondance of GFA node IDs to giraffe/call node IDs
giraffe
pggb
vg
updated 3 days ago by
Wenhai
• 0 • written 6 weeks ago by
javierbelmor
• 0
0
votes
3
replies
234
views
merged rs number information
merged
dbsnp
3 days ago by
sskimvd
• 0
0
votes
4
replies
183
views
MRI VBM issue
MRI
VBM
ROI
Rhesus
3 days ago by
Ethan Lee
• 0
0
votes
0
replies
99
views
Does breadth of coverage signify expression?
Coverage
breadth
Bedtools
Expression
count
3 days ago by
Smriti
▴ 10
0
votes
2
replies
287
views
Find Genes in Homer Analysis that have the enriched Motif
single
ORA
nucleus
mRNA
Homer
3 days ago by
je71xusa
• 0
0
votes
6
replies
292
views
I made an error when using metawrap to binning
metagenome
binning
metawrap
3 days ago by
alice005201314
• 0
0
votes
1
reply
161
views
Python function to export the annotated records to genbank file using python and biopython
biopython
python
bioinformatic
programming
updated 3 days ago by
barslmn
★ 2.0k • written 3 days ago by
Saurabh
• 0
0
votes
1
reply
160
views
The difference blastn output when using subject and db options
genome
blastn
mite
annotation
tracker
updated 3 days ago by
GenoMax
136k • written 3 days ago by
praasu
▴ 40
0
votes
0
replies
106
views
scVelo cell transitions from marker gene expressing cells
velocity
scvelo
RNA
2 days ago by
rbronste
▴ 420
0
votes
1
reply
149
views
VCF conservation into Treemix
Treemix
Plink
VCF
updated 2 days ago by
singh.vijender
▴ 110 • written 2 days ago by
reza
▴ 300
0
votes
3
replies
300
views
R ComplexHeatmap - Dividing Column Annotation into Distinct Y-Axis Scales
R
complexheatmap
updated 2 days ago by
jv
★ 1.2k • written 8 days ago by
TC_Chang
▴ 10
0
votes
0
replies
148
views
Bcftools consensus when reference is a deletion
consensus
vcf
2 days ago by
selplat21
▴ 20
0
votes
1
reply
160
views
bam or VCF files from GSE75010
bam
file
or
VCF
updated 2 days ago by
ATpoint
78k • written 2 days ago by
ahonya
• 0
0
votes
0
replies
103
views
MUSCLE Protein Alignment of Distantly Related Proteins
muscle
protein
alignment
2 days ago by
Richard Fontaine
• 0
0
votes
0
replies
107
views
How to find node Postion and source(sample) ?
vg
2 days ago by
zhang yi xing
▴ 20
0
votes
2
replies
315
views
Help doing differential expression analysis -experimental design and gProfiler TF interpretation-
gProfiler
mRNA
Differential-expression
TCGA
updated 2 days ago by
rajabolacuan
• 0 • written 9 days ago by
Camilo Andres
▴ 40
0
votes
2
replies
1.4k
views
AttributeError: module 'collections' has no attribute 'Hashable'
Spades
updated 2 days ago by
jiyoung
▴ 20 • written 7 months ago by
Hayler Edu
▴ 30
188 results • Page
3 of 4
Recent Votes
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
Answer: 1000 genomes project reference panel - GRCh38
Answer: 1000 genomes project reference panel - GRCh38
Comment: IMPUTE2- Map file for custom reference panel
IMPUTE2- Map file for custom reference panel
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Comment: Problematic fastq files...How can we trust them?
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99k
perhaps ask her about the origin of the data, how was the data postprocessed FASTQ data is a bit more resilient than other types of data a…
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If you have an organism that lacks the GO to gene mapping then you have to find a way to assign these terms to your genes. Basically your …
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you have not mentioned what kind of resources you have, how much data you have to process and what the expected genome/transcriptome sizes …
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Then tell her to bring proper data. In the lab you also don't use buffers with mold growing in it, and in bioinformatics we don't start wit…
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Its not my data. An external researcher is visiting and she wanted from us to do some bioinformatics... The samples were not sequenced by u…
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They could have saved themselves a ton of money by sequencing this on a miseq.
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Thank you. I asked a stupid question.
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