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121,931 results • Page
103 of 2439
Sort: Rank
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Views
Votes
Replies
0
votes
0
replies
477
views
How to pre-process raw microarray data?
limma
microarray
WGCNA
updated 15 months ago by
GenoMax
154k • written 15 months ago by
egascon
▴ 60
1
vote
1
reply
555
views
Mass spectrometry data analysis
Proteome-discoverer
15 months ago by
Bioinformatics_16
• 0
0
votes
0
replies
332
views
ERROR with PRSKB
prskb
vcf
updated 15 months ago by
Ram
45k • written 15 months ago by
stefania.morelli92
• 0
0
votes
0
replies
370
views
Subunit Annotation in Genome Scale Models
database
engineering
uniprot
metabolic
enzyme
15 months ago by
shafiat.dewan
• 0
0
votes
0
replies
329
views
CIBERSORTx PHP Fatal error
CIBERSORTx
PHP
15 months ago by
JIWON KIM
• 0
0
votes
4
replies
835
views
Estimating haplotypes from sequencing reads
sequencing
reads
haplotypes
15 months ago by
Arline
• 0
2
votes
7
replies
3.5k
views
Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsapiens.v86?
org.hs.eg.db
EnsDb.Hsapiens.v86
biomaRt
ensembl
updated 15 months ago by
tomas4482
▴ 430 • written 15 months ago by
DGTool
▴ 290
0
votes
1
reply
452
views
full lenght gene amplification from RNA seq data
RNAseq
offtopic
updated 15 months ago by
GenoMax
154k • written 15 months ago by
maryum
• 0
2
votes
4
replies
936
views
NCBI gene data
Variants
NCBI
15 months ago by
chandrakala.m
• 0
0
votes
1
reply
486
views
Can I downsize ChIP-seq data for ChIP-ed samples
ChIP-seq
downsize
updated 15 months ago by
rfran010
★ 1.6k • written 15 months ago by
Insect_gmx
• 0
10
votes
5
replies
11k
views
What Is The Meaning Of Snp Strand
snp
mapping
strand
updated 15 months ago by
bounlu
▴ 270 • written 14.0 years ago by
Jonathan Hsu
▴ 60
0
votes
0
replies
500
views
I need to binary plink files of human genome reference build37, however, Im completely lost and have no idea from where to begin
bplinkfiles
human
genome
plink
updated 15 months ago by
GenoMax
154k • written 15 months ago by
Marcos
• 0
0
votes
0
replies
442
views
MrBayes 3.2.7a in mpi mode staying at stationary state from the beginning
mpi
mrbayes
stationary
beagle
library
15 months ago by
ricfoz
▴ 100
1
vote
14
replies
2.6k
views
Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
deseq
updated 15 months ago by
i.sudbery
22k • written 15 months ago by
Alexander
▴ 220
0
votes
3
replies
1.2k
views
Transcriptome analysis of virus infected plants and their controls
DEG
heatmap
rna
updated 15 months ago by
manaswwm
▴ 570 • written 15 months ago by
diya
• 0
1
vote
2
replies
1.4k
views
Monocle3 Download error in R
Rstudio
Monocle3
updated 15 months ago by
GenoMax
154k • written 16 months ago by
odi
▴ 10
0
votes
3
replies
733
views
[bwa_idx_build] fail to open file 'bwtsw' : No such file or directory
bwa
updated 15 months ago by
GenoMax
154k • written 15 months ago by
efan18808
• 0
0
votes
0
replies
340
views
wilcoxon signed rank test
anova
R
mixed-model
fixed-effect
random-effect
updated 15 months ago by
Ram
45k • written 15 months ago by
Andy
• 0
0
votes
2
replies
1.6k
views
How to download multiple fasta sequences and keep them organized by what genome they came from
Blast
Sequences
15 months ago by
ATS
▴ 10
1
vote
3
replies
636
views
After DimHeatmap no histogram values
R
Seurat
DimHeatmap
updated 15 months ago by
Ram
45k • written 15 months ago by
Sander
• 0
0
votes
2
replies
768
views
Add tags/ header lines to a vcf file
bcftools
vcf
updated 15 months ago by
GenoMax
154k • written 15 months ago by
mahlet.teka
• 0
0
votes
0
replies
626
views
News:
Introduction to GWAS (online course)
GWAS
Imputation
Pipeline
updated 15 months ago by
Ram
45k • written 15 months ago by
Physalia-courses
★ 2.6k
0
votes
2
replies
570
views
Making Changes to SequenceTubeMap
sequencetubemap
vg
15 months ago by
Mayank
▴ 10
1
vote
0
replies
920
views
Job:
[UK] Bioinformatics Programmer (Visa sponsored)
nextflow
galaxy
genomes
bacterial
metagenomics
15 months ago by
µbinfie
▴ 20
0
votes
0
replies
355
views
Help finding 10x genomics single cell dataset along with VCF
single-cell
variant-calling
updated 15 months ago by
Ram
45k • written 15 months ago by
debdeepto.m
• 0
0
votes
3
replies
941
views
WoLFPSort Installation
WOLFPSort
updated 15 months ago by
dthorbur
★ 3.1k • written 16 months ago by
Patadu94
• 0
3
votes
6
replies
1.3k
views
Removing batch effect and doing differential gene expression analysis
RNA-seq
updated 15 months ago by
ATpoint
89k • written 15 months ago by
sarahlee.bekaert
• 0
0
votes
2
replies
1.0k
views
Signac: RegionStats: Not all seqlevels present in supplied genome, trying to load regions beyond the boundaries of non-circular sequence "chr8"
Seurat
RegionStats
single-cell
ATAC-seq
Signac
updated 15 months ago by
GenoMax
154k • written 15 months ago by
yau
• 0
1
vote
1
reply
543
views
Comparing quality across samples in a VCF
vcf
updated 15 months ago by
Ram
45k • written 16 months ago by
ekirsch
• 0
0
votes
0
replies
422
views
miRNA prediction using mirMachine; what are the ways to study the functional significance of miRNAs?
annotation
assembly
mirmachine
mirna
15 months ago by
Vijith
▴ 100
6
votes
7
replies
1.2k
views
6 follow
FASTQ header correction to remove .1 and .2 from paired end - SRA files
Fastq
updated 15 months ago by
noodle
▴ 650 • written 15 months ago by
genomics_buddy
• 0
1
vote
9
replies
5.3k
views
6 follow
collapsePathways function throwing error
GSEA
fgsea
R
updated 11 months ago by
txema.heredia
▴ 250 • written 2.5 years ago by
Pac314
▴ 10
0
votes
0
replies
390
views
Creation of appropriate model matricies for Surrogate Variable Analysis (SVA)
normalization
rna-seq
sva
microarray
15 months ago by
qile0317
• 0
0
votes
2
replies
734
views
Exome sequencing dataset for SKAT
SKAT
VEP
exome-sequencing
16 months ago by
aurina.arnatk
▴ 10
1
vote
0
replies
573
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
updated 16 months ago by
Diego
• 0 • written 17 months ago by
Nishat
▴ 10
4
votes
13
replies
3.0k
views
7 follow
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
DEG
limma
rstudio
updated 15 months ago by
GenoMax
154k • written 16 months ago by
egascon
▴ 60
1
vote
3
replies
782
views
Mismatch between number of reads in fastq and mapped reads
samtools
bam
updated 15 months ago by
samuel.a.odonnell
▴ 600 • written 16 months ago by
shpak.max
▴ 60
0
votes
1
reply
538
views
Help Needed for Submitting Multiple Sequences to ENA
ENA
DATABASE
METAGENOMIC
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Lucas
• 0
0
votes
1
reply
477
views
gene annotation for mapman
mapman
affymatrix
annotation
updated 16 months ago by
GenoMax
154k • written 16 months ago by
hellokwmin
• 0
1
vote
3
replies
1.4k
views
Changing barplot color on enrichment-based data
ggplot2
updated 15 months ago by
GenoMax
154k • written 16 months ago by
Gerard
▴ 20
0
votes
2
replies
710
views
Bias in FDR distribution
DEG
distribution
p-value
limma
16 months ago by
Daniel
▴ 10
9
votes
5
replies
3.3k
views
Tool:
SEDA (SEquence DAtaset builder): a desktop tool for processing FASTA files containing DNA and protein sequences
fasta
sequences
java
16 months ago by
Hugo
▴ 400
1
vote
1
reply
672
views
vg view and vg surject both crashing after running giraffe
surject
view
extract
giraffe
vg
updated 15 months ago by
Ram
45k • written 16 months ago by
Jen
• 0
1
vote
2
replies
2.4k
views
Trimming adapters and primer on ONT nanopore sequencing
trimming
16S
nanopore
15 months ago by
l.gallucci
▴ 20
0
votes
0
replies
376
views
Looking to understand my Chi-squared results from a Pool-seq/ATAC-seq analysis
ATAC-seq
Pool-seq
16 months ago by
Ronin
▴ 10
1
vote
4
replies
1.3k
views
VG autoindexing error: Chromosome path not found in graph or haplotypes
vg
vgteam
15 months ago by
l.dammer
• 0
1
vote
2
replies
709
views
Sequece Raw Data QC A/T.G.C Distribution
illumina
sequencing
FastQC
updated 16 months ago by
GenoMax
154k • written 16 months ago by
SomeOne
▴ 240
2
votes
8
replies
1.2k
views
Are there instutions that allow to use their hpc without charge?
16s
hpc
Nanopore
updated 15 months ago by
a.alnawfal.1992
▴ 360 • written 16 months ago by
kerianaleerivera
▴ 10
0
votes
1
reply
1.0k
views
What is the best CNV caller for trio families WES data?
trio
autosomal
WES
families
CNV
updated 16 months ago by
Samuel
• 0 • written 4.4 years ago by
fkm.022
• 0
1
vote
4
replies
790
views
Best Kits for RNA extraction from different fish tissue for annotation and gene expression analysis
gene-expression
kits
annotation
RNA-extraction
RNA_sequencing
updated 15 months ago by
dsull
★ 7.7k • written 16 months ago by
Human
• 0
121,931 results • Page
103 of 2439
Recent Votes
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Looking to learn practical bioinformatics
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Recent Replies
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
▴ 20
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
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