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121,931 results • Page
102 of 2439
Sort: Rank
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0
votes
1
reply
582
views
Hybrid ScRNA Seq genome (transcriptome
scrna
10x
cellranger
updated 15 months ago by
dsull
★ 7.7k • written 15 months ago by
Kay
• 0
0
votes
1
reply
481
views
Fastqc: kmer-content failed
fastqc
kmer
updated 15 months ago by
Ram
45k • written 15 months ago by
Joseph
• 0
5
votes
5
replies
1.3k
views
Home made clustering
R
clustering
15 months ago by
Bastien Hervé
6.5k
4
votes
9
replies
2.8k
views
How to solve Freebayes memory issue
NGS
freebayes
SNP
15 months ago by
anikcropscience
▴ 270
5
votes
3
replies
1.3k
views
chIP-seq vs ATACseq analysis
ATACseq
15 months ago by
QX
▴ 80
0
votes
0
replies
610
views
How to calculate the P-distance in Heteroplasmy Analysis Using mtDNA PacBio Data: Tools and Procedures
pacBio
Heteroplasmy
Somatic-mutations
mtDNA
updated 15 months ago by
Ram
45k • written 15 months ago by
hashim.rana11
▴ 40
1
vote
1
reply
699
views
Fastq files from control WGS X30 samples, Illumina Novaseq 6000
dna-seq
wgs
fastq
updated 15 months ago by
Ram
45k • written 15 months ago by
damian.loska
▴ 20
1
vote
2
replies
869
views
cancer type prediction based on RNASeq gene expression data?
cancer
RNA-seq
updated 15 months ago by
Ram
45k • written 15 months ago by
J.F.Jiang
▴ 930
0
votes
3
replies
759
views
Nextflow pipeline - GATK error
nextflow
applyBQSR
gatk
updated 15 months ago by
Pierre Lindenbaum
166k • written 15 months ago by
eesha28112001
• 0
0
votes
1
reply
1.3k
views
invalid class “Assay” object issue from Seurat
seurat
updated 15 months ago by
bk11
★ 3.1k • written 15 months ago by
QX
▴ 80
8
votes
3
replies
1.4k
views
conda-like env for R
R
conda
updated 15 months ago by
dthorbur
★ 3.1k • written 15 months ago by
QX
▴ 80
2
votes
3
replies
939
views
r script for wgcna analysis
microarray
wgcna
updated 15 months ago by
andres.firrincieli
3.9k • written 15 months ago by
Ruchi
▴ 10
0
votes
3
replies
1.1k
views
scRNA integration problem with cluster not being separated
Seurat
scRNA
updated 15 months ago by
QX
▴ 80 • written 15 months ago by
mnx0723
• 0
0
votes
0
replies
366
views
Conservation score calculation
Conservation-score
15 months ago by
Varsha
• 0
5
votes
4
replies
1.2k
views
Basic question about lncRNA identification
lncRNA
15 months ago by
ZZOYEA
▴ 20
1
vote
3
replies
976
views
Can I go from kallisto results to SEURAT directly
cell
bustoolls
kallisto
single
updated 15 months ago by
dsull
★ 7.7k • written 15 months ago by
biotrekker
▴ 110
0
votes
5
replies
1.3k
views
How to know protomter position in the chromosome?
ATAC-seq
updated 15 months ago by
rfran010
★ 1.6k • written 15 months ago by
sunyeping
▴ 110
2
votes
4
replies
2.1k
views
Need to create a small artificial SRA file for unit testing
sequencing
sequence
5.6 years ago by
Sean McCorkle
▴ 20
8
votes
4
replies
1.2k
views
Normalization of samples with very different transcriptomic profiles
DESeq2
normalization
RNA-seq
edgeR
DGE
updated 15 months ago by
ATpoint
89k • written 15 months ago by
paulanavarrete116
• 0
0
votes
4
replies
1.1k
views
Test custom signature using GSEA in scRNA-seq
scRNA-seq
Seurat
GSEA
15 months ago by
bio_info
▴ 20
1
vote
2
replies
718
views
Question about protein-peptide docking
active-site
docking
updated 15 months ago by
Mensur Dlakic
★ 30k • written 15 months ago by
Acervo
• 0
4
votes
6
replies
2.2k
views
SortmeRNA command of the latest version does not work
metatranscriptomics
sortmerna
updated 15 months ago by
Ram
45k • written 16 months ago by
eimanpharmacist
▴ 20
0
votes
0
replies
402
views
Genome mapping mm39 via GTK (BaseRecalibration) - Where to get known sites of polymorphisms?
mm39
15 months ago by
Rashid
• 0
0
votes
0
replies
440
views
Value of short kmer lengths with 300PE sequencing
metagenomics
sequencing
spades
microbiome
15 months ago by
Bryan
▴ 20
0
votes
0
replies
497
views
News:
Online course: Reproducibility Data Analysis with R, from 28-31 October
R
Git
Quarto
Reproducibility
Docker
updated 15 months ago by
Ram
45k • written 15 months ago by
Physalia-courses
★ 2.6k
0
votes
3
replies
691
views
Bcftools consensus unexpected output
Bcftools
updated 15 months ago by
Ram
45k • written 15 months ago by
selplat21
▴ 20
0
votes
8
replies
1.9k
views
Is it Possible to "Merge" data from Replicates within a VCF SNP File
snp
vcf
genomics
plink
updated 15 months ago by
Ram
45k • written 16 months ago by
ajbarrett98
• 0
1
vote
3
replies
889
views
Genomic coordinates in the BioNano VCF
bionano
VCF
SMAP
optical_genome_mapping
updated 15 months ago by
cmdcolin
★ 4.3k • written 15 months ago by
avigail.shnaider
• 0
1
vote
3
replies
1.3k
views
Filtering VCF files based on VAF giving incorrect results
GATK
picard
VCF
bcftools
updated 15 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
Arton
▴ 20
0
votes
0
replies
350
views
Genetic DIversity Of Macrolide-Resistant Shigella species
comparative-genomics
prokka
updated 15 months ago by
Ram
45k • written 15 months ago by
eduardooseigyimah
• 0
3
votes
2
replies
1.5k
views
Non-symmetric shrinkage with apeglm?
RNA-Seq
DESeq2
apeglm
updated 15 months ago by
Ram
45k • written 4.5 years ago by
CJP-OHRI
▴ 30
0
votes
6
replies
1.6k
views
I am trying to get my head around amplicon sequencing library prep but can't understand how the adapters are attached
library-preparation
illumina
amplicon
updated 15 months ago by
Ram
45k • written 15 months ago by
ScottDansk
▴ 10
0
votes
0
replies
409
views
Paired snATACseq and snRNAseq over multiple tissues - best approaches
Signac
ArchR
Seurat
ATACseq
15 months ago by
matt.a.bennett25890
▴ 30
0
votes
7
replies
1.7k
views
How do I update the gene names of TCGA data correctly?
HGNC
TCGA
updated 15 months ago by
Zhenyu Zhang
★ 1.3k • written 15 months ago by
Ivana
• 0
0
votes
1
reply
1.0k
views
Atac seq Annotation
Atac-seq
Signac
Seurat
updated 15 months ago by
ATpoint
89k • written 15 months ago by
yau
• 0
2
votes
1
reply
574
views
Correct pvalue threshold for a GWAS analysis on mitochondrial variants with PLINK2
mitochondria
gwas
p-value
plink2
updated 15 months ago by
Ram
45k • written 15 months ago by
biofather
▴ 10
0
votes
0
replies
369
views
MToolBox: cat: test.lst: No such file or directory
MToolBox
updated 15 months ago by
Ram
45k • written 15 months ago by
Stavroula
• 0
0
votes
1
reply
605
views
Query regarding single cell rna seq annotation using marker genes
scRNA-seq
updated 15 months ago by
Ram
45k • written 15 months ago by
TNF_alpha
• 0
0
votes
1
reply
1.4k
views
Building a mappability mask with SNPable
SNPable
mappability
samtools
updated 15 months ago by
oviscandensis
• 0 • written 2.1 years ago by
biostars
▴ 10
4
votes
8
replies
1.6k
views
BAM File Quality Sequences Are "?" and File Size is Very Small After STAR Alignment
Bam
Fastq
Gene-expression
RNA-seq
updated 15 months ago by
Ram
45k • written 15 months ago by
Tommmm
• 0
0
votes
1
reply
723
views
Bismark Methylation calling
Bismark
Methylation
WGBS
updated 15 months ago by
Ram
45k • written 15 months ago by
Keem Uarren Eiryll
▴ 10
2
votes
4
replies
912
views
Differential gene expression
Differential-gene-expression
15 months ago by
goyal.shiwali
▴ 20
0
votes
0
replies
445
views
Why Does Metalign Relative Abundance Change?
metagenomics
metalign
15 months ago by
echolley
▴ 20
4
votes
0
replies
23k
views
Herald:
The Biostar Herald for Wednesday, June 05, 2024
herald
15 months ago by
Biostar
3.6k
1
vote
5
replies
1.1k
views
Failure in inner_join
dplyr
r
updated 15 months ago by
zx8754
12k • written 15 months ago by
egascon
▴ 60
1
vote
2
replies
731
views
Please Help Me Understand GWAS Results
rMVP
GWAS
GAPIT
15 months ago by
chloek88
• 0
1
vote
3
replies
1.4k
views
Could not parse a VCF file when using bcftools annotate
bcftools
updated 15 months ago by
Ram
45k • written 15 months ago by
ManuelDB
▴ 110
0
votes
1
reply
1.6k
views
Changing gap open and extension penalties in muscle (or any other command line tool that works on mac, really)
multiple-sequence-alignment
updated 15 months ago by
erikatatianacs
• 0 • written 2.3 years ago by
sodiumnitrate
▴ 20
10
votes
8
replies
7.2k
views
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
ucsc
bigwig
BedgraphToBigWig
bamCoverage
deeptools
updated 15 months ago by
QX
▴ 80 • written 7.1 years ago by
m98
▴ 440
0
votes
0
replies
429
views
News:
Course: Seafood Genomics
Seafood
FoodTraceability
Nanopore
Genomics
15 months ago by
Physalia-courses
★ 2.6k
121,931 results • Page
102 of 2439
Recent Votes
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Looking to learn practical bioinformatics
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Recent Replies
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
▴ 20
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
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