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written 15 months ago by
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15 months ago by
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updated 15 months ago by
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written 15 months ago by
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updated 15 months ago by
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written 15 months ago by
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updated 15 months ago by
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written 15 months ago by
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Recent Replies
Comment: What happened to biomart.org
by
GenoMax
153k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
153k
> I want to reconstruct the assembly using the pacbio reads only.
Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴
50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
•
0
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
•
0
I am trying to reproduce the assembly from the raw pacbio reads.
I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc.
Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
•
0
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
•
0
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1]
[1]: https://www.langmead-lab.org/…
Comment: Looking to learn practical bioinformatics
by
GenoMax
153k
This (or a variation) question is asked every so often. You may want to take a look at these past threads and the discussions in there to g…
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
GenoMax
153k
It is an investment in time and will ensure that there is no extraneous sequence is present, if you choose to do scanning/trimming.
That …
Comment: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
saruman
▴
10
It is astonishing that there is no straightforward way to match accessions and their host. Anyhow, I will use `datasets` as suggested, thou…
Comment: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
Mensur Dlakic
★
30k
Always good to learn new things.
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