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121,931 results • Page
97 of 2439
Sort: Rank
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Votes
Replies
0
votes
1
reply
503
views
Clusterprofiler with M. tuberculosis genome
clusterprofiler
updated 15 months ago by
bio_info
▴ 20 • written 15 months ago by
Maurice
• 0
2
votes
10
replies
1.9k
views
CutNtag normalization without spike in
cutNtag
csaw
ChIPseq
diffBind
15 months ago by
gamma.jian
▴ 40
1
vote
7
replies
2.1k
views
gene expression normaliztion
edgeR
RNA-seq
gene-expression
updated 14 months ago by
Gordon Smyth
★ 8.3k • written 15 months ago by
bioinfo1994
▴ 20
0
votes
0
replies
416
views
How VEP BAM Edit works?
variant
VEP
15 months ago by
bharata1803
▴ 580
0
votes
0
replies
357
views
Automated analysis of amplicon sequence datasets from multiple FASTQ files
DADA2
AMPLICON
OTU
ASV
15 months ago by
Bio_12
• 0
4
votes
9
replies
3.3k
views
pbmm2 alignment of long reads
Long-reads
pbmm2
alignment
15 months ago by
priya.bmg
▴ 70
1
vote
1
reply
790
views
GATK GRCh38 genome version for biomaRt
biomart
updated 15 months ago by
GenoMax
154k • written 15 months ago by
ramiro.barrantes
▴ 60
2
votes
12
replies
3.3k
views
mergeCutHeight in WGCNA and correlation type for correct module identification
mergeCutHeight
correlation
WGCNA
categorigal
15 months ago by
seta
★ 1.9k
1
vote
4
replies
1.0k
views
How to construct Mitochondrial Haplotype network?
Mitochondrial
Haplotype
pacBio
Network
mtDNA
15 months ago by
hashim.rana11
▴ 40
0
votes
1
reply
847
views
Need Help with Normalizing Western Blot Data with Inter-Gel Variability
Western-Blot
updated 15 months ago by
rfran010
★ 1.6k • written 15 months ago by
Anto
• 0
3
votes
2
replies
1.1k
views
Error while using pbsv discover, "ERROR: map::at"
bam
PacBio
pbsv
15 months ago by
wch2123
▴ 10
0
votes
0
replies
533
views
News:
Online course: Introduction to CRISPR
CRISPR
Genome-Editing
Evolution
updated 15 months ago by
Ram
45k • written 15 months ago by
Physalia-courses
★ 2.6k
0
votes
3
replies
828
views
To extract uniques SNPs froma. multisample VCF file
VCF
15 months ago by
sam
▴ 30
0
votes
1
reply
681
views
Converting gtf file from Ensembl to the UCSC Ensembl format (ensGene.txt format)
gtf
Ensembl
UCSC
annotation
updated 15 months ago by
sam
▴ 30 • written 15 months ago by
rahu
• 0
0
votes
3
replies
812
views
Convert whole genome mRNA file from NCBI to gff file.
A
updated 15 months ago by
sam
▴ 30 • written 15 months ago by
nish_laa
• 0
2
votes
6
replies
1.3k
views
Finding scRNA-seq datasets of healthy human ovaries
python
GEO
single-cell
RNA
updated 15 months ago by
Ram
45k • written 15 months ago by
AlexStar
▴ 200
2
votes
5
replies
1.2k
views
DESeq2_ How to Account for the Expression Levels of a Specific Gene?
Differential-Expression-Analysis
DESeq2
updated 15 months ago by
jared.andrews07
★ 19k • written 15 months ago by
BioNovice247
▴ 20
0
votes
5
replies
2.2k
views
Subset cells in Seurat data based on reads and gene expression
seurat
updated 15 months ago by
Ram
45k • written 15 months ago by
bgbs
• 0
7
votes
4
replies
2.7k
views
Tool:
Neurosnap: Platform for making access to bioinformatic tools as simple as possible
protein
docking
rna
transcriptome
toxicity
updated 15 months ago by
Kevin
▴ 100 • written 15 months ago by
keaun
▴ 40
0
votes
0
replies
405
views
From plink to GeneHunter format
linkage-analysis
updated 15 months ago by
Ram
45k • written 15 months ago by
lucas_
▴ 20
1
vote
2
replies
636
views
Comparative analyses of non coding genetic sequences
non-coding-sequences
Evolution
updated 15 months ago by
Ram
45k • written 15 months ago by
José
▴ 10
1
vote
2
replies
790
views
Shallow sequencing is not a random subsample of deep sequencing
Illumina
scRNA-seq
15 months ago by
jockbanan
▴ 440
1
vote
4
replies
1.5k
views
Volcano plot with different font size for gene labels
rna-seq
enhancedVolcano
volcano-plot
updated 15 months ago by
Trivas
★ 1.9k • written 15 months ago by
Assa Yeroslaviz
★ 1.9k
0
votes
0
replies
380
views
Online tool for Kaplar-Meier Plot for bone and lung free-metastases survival
survival
Kaplar-Meier-plot
free-metastases
updated 15 months ago by
Ram
45k • written 15 months ago by
matteo.levorato
• 0
2
votes
7
replies
1.7k
views
Overlapping cut and tag H3k27 peaks and ATAC-Seq peaks
ATAC-Seq
cutNtag
updated 15 months ago by
Ram
45k • written 15 months ago by
new
▴ 10
1
vote
1
reply
945
views
Comprehensive list of public protein databases
BLAST
updated 15 months ago by
Ram
45k • written 15 months ago by
jm7618
• 0
0
votes
1
reply
613
views
Pathway and associated gene coordinates
Pathway-analysis
updated 15 months ago by
yura.grabovska
▴ 820 • written 15 months ago by
Can_Res
• 0
4
votes
3
replies
3.1k
views
Open the Seurat count matrix in RStudio
Seurat
RStudio
updated 15 months ago by
ATpoint
89k • written 15 months ago by
solo.albif
• 0
0
votes
1
reply
617
views
GSVA Setup
gsva
gene-enrichment
updated 15 months ago by
Ram
45k • written 15 months ago by
michaelhojungyoon
▴ 10
9
votes
9
replies
1.6k
views
How to get gene name for 900k SNPs
biomart
entrez
pyensembl
snp
gene
updated 15 months ago by
Pierre Lindenbaum
166k • written 15 months ago by
_quantum_girl_
▴ 60
1
vote
4
replies
957
views
Is there any set threshold for hisat2 alignment and featurecount assignment to select samples further?
hisat2
alignment
featurecount
15 months ago by
sukeshinik5
▴ 50
0
votes
0
replies
450
views
primer blast error
Blast
Primer
15 months ago by
emma.a
▴ 130
3
votes
5
replies
1.5k
views
ROH and Manhattan plot
ROH
Manhattan
plink
updated 15 months ago by
bk11
★ 3.1k • written 15 months ago by
Star:)
▴ 50
0
votes
0
replies
479
views
Assembly by the metaSPAes from several libraries of paired-end reads with different reads lengths.
paired
illumina
metaspades
MGI
15 months ago by
SergFly
▴ 50
9
votes
6
replies
2.6k
views
Why is UCSC lift over failing to convert a specific position?
UCSC
liftover
updated 7 weeks ago by
cmdcolin
★ 4.3k • written 15 months ago by
_quantum_girl_
▴ 60
0
votes
2
replies
941
views
gProfiler vs Panther_go in overrepresentation pathways R analysis
pathways
Reactome
Panther
Overrepresentation
gProfiler
updated 15 months ago by
NancyTLi
▴ 20 • written 16 months ago by
tchosange
• 0
2
votes
3
replies
981
views
Reactome GSA results
Pathway-analysis
ReactomeGSA
15 months ago by
Shaimaa Gamal
▴ 10
0
votes
2
replies
759
views
Batch effects in RNAseq
Batch-effects
deseq2
RNA-seq
15 months ago by
rb_99
• 0
0
votes
3
replies
2.3k
views
Speed up Seurat FindClusters execution?
Seurat
15 months ago by
CTLong
▴ 140
0
votes
3
replies
850
views
How to get reference lines haplotype path from PHG
haplotype
PHG
reference
updated 15 months ago by
lcj34
▴ 420 • written 15 months ago by
zx
• 0
0
votes
1
reply
606
views
SNPSift countRef() on a VCF with missing values
SNPSift
15 months ago by
FJK
• 0
0
votes
0
replies
949
views
News:
Webinar: "Integrated analysis of single-cell data across technologies, modalities, and perturbations" by Rahul Satijia (author of Seurat)
integrated-analysis
Seurat
single-cell
updated 15 months ago by
Ram
45k • written 15 months ago by
Claire Watson
▴ 60
0
votes
8
replies
1.9k
views
6 follow
How to find transcription factors list?
Genes
TF
updated 15 months ago by
gglim
▴ 220 • written 15 months ago by
Tiara
• 0
4
votes
8
replies
2.4k
views
Interaction analysis using DESeq while adjusting for covariates.
DESeq2
interaction
RNA-Seq
updated 15 months ago by
Thomas Neff
▴ 10 • written 15 months ago by
Sumit Paliwal
▴ 40
1
vote
1
reply
1.1k
views
Forum:
Looking for opinions on the MSc Computational Biology and Bioinformatics program at the University of Göttingen
masters
germany
updated 15 months ago by
GenoMax
154k • written 15 months ago by
adina
• 0
9
votes
7
replies
1.6k
views
Does PRS distribution of target data should follow gaussian distribution?
Polygenic-risk-score
PRS
GWAS
updated 15 months ago by
Ram
45k • written 15 months ago by
bubgoose
▴ 20
2
votes
3
replies
1.0k
views
How to Convert 10x BCL Files to FASTQ Without a Sample Sheet Using Only Run Report Information?
bcl2fastq
updated 15 months ago by
Ram
45k • written 15 months ago by
Divya
• 0
1
vote
5
replies
1.5k
views
Strand-specific quantification of RNA-seq data without strand-aware mapping
rna-seq
yeast
updated 15 months ago by
Carlo Yague
9.0k • written 15 months ago by
tdsone
• 0
2
votes
5
replies
1.5k
views
Warning in Denovo Genome Assembly via SPADes
Assembly
SPAdes
fungi
Illumina
updated 15 months ago by
Joe
22k • written 15 months ago by
SomeOne
▴ 240
0
votes
0
replies
472
views
News:
Online course: Conservation Genomics
SNPs
PopulationGenomics
ConservationGenomics
inbreeding
15 months ago by
Physalia-courses
★ 2.6k
121,931 results • Page
97 of 2439
Recent Votes
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Looking to learn practical bioinformatics
Looking to learn practical bioinformatics
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: protein interaction prediction
Answer: protein interaction prediction
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154k
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Matthias Zepper
5.1k
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to
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Recent Replies
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Comment: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
▴ 20
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
Comment: Looking to learn practical bioinformatics
by
GenoMax
154k
This (or a variation) question is asked every so often. You may want to take a look at these past threads and the discussions in there to g…
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
GenoMax
154k
It is an investment in time and will ensure that there is no extraneous sequence is present, if you choose to do scanning/trimming. That …
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