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121,929 results • Page
95 of 2439
Sort: Rank
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0
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954
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Job:
Senior Bioinformatics Engineer
bioinformatics-engineer
Simons-foundation
updated 15 months ago by
Ram
45k • written 15 months ago by
vanessa
▴ 10
1
vote
2
replies
1.8k
views
CellCycleScoring error
seurat
cell-cycle
scRNA
15 months ago by
marco.barr
▴ 180
1
vote
4
replies
999
views
bedtools -F minimum overlap, possible BUG ?
bedtools
RNA-Seq
updated 15 months ago by
Ram
45k • written 15 months ago by
difraiadomenico
▴ 10
4
votes
2
replies
1.6k
views
Understanding Differing results between STAR and kallisto
quantification
STAR
kallisto
RNA-Seq
updated 15 months ago by
rfran010
★ 1.6k • written 15 months ago by
Assa Yeroslaviz
★ 1.9k
0
votes
1
reply
658
views
QUALITY SCORE OF human vcf file genearted through GATK
gatk
phred
variant-calling
15 months ago by
ashaneev07
▴ 50
0
votes
1
reply
753
views
lncRNA-miRNA interaction
miRNA
lncRNA
updated 15 months ago by
onco-research
• 0 • written 23 months ago by
ziyan
• 0
0
votes
0
replies
478
views
News:
Online Course: Generalized Linear Mixed Models in R (Oct 14-18)
R
Mixed-Models
GLLM
updated 15 months ago by
Ram
45k • written 15 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
491
views
Detection of germinal CNVs with CNVkit
CNVkit
CNV
updated 15 months ago by
Ram
45k • written 15 months ago by
g.spirito
• 0
1
vote
2
replies
771
views
Removal of low read counts prior to DESeq2?
DESeq2
RNA-Seq
14 months ago by
robert.flynn.21
▴ 10
0
votes
3
replies
1.2k
views
ENA browser fasta endpoint returns 500, even on their own example
ENA
fasta
updated 15 months ago by
Michael
56k • written 15 months ago by
Kevin
• 0
0
votes
2
replies
827
views
Problem in RNASeq data analysis
Transcriptomics
RNASeq
15 months ago by
shwetamgr1
▴ 20
4
votes
3
replies
3.9k
views
unmapped reads with pysam
pysam
updated 15 months ago by
Ram
45k • written 6.7 years ago by
grant.hovhannisyan
★ 2.6k
2
votes
11
replies
4.2k
views
How to extract unmapped mate for specific reads using pysam or other module in python?
pysam
updated 15 months ago by
i.sudbery
22k • written 2.9 years ago by
Xi
▴ 10
3
votes
5
replies
1.1k
views
Unable to retrieve the "Assembly method" of an assembly using Edirect in the terminal
Assembly
Sequencing
Genomics
15 months ago by
Mohamed Samir
▴ 30
0
votes
1
reply
995
views
What tools are there to quantify m6A methylation of Nanopore bam files?
m6a
methylation
Nanopore
RNA
updated 15 months ago by
Ram
45k • written 15 months ago by
smb51095
• 0
0
votes
0
replies
438
views
How are .cmap files generated using Bionano?
bionano
map
genome
assemblies
15 months ago by
BioinfoBee
• 0
6
votes
9
replies
26k
views
8 follow
VCF To FASTA
next-gen
genetic
genome
updated 15 months ago by
LauferVA
4.8k • written 6.7 years ago by
Myo Naung
▴ 10
15
votes
4
replies
1.4k
views
How to identify cell identities in mixed scRNA-seq using mutational signatures from bulk RNA-seq
RNA-seq
scRNA-seq
15 months ago by
Chilly
★ 1.3k
0
votes
0
replies
361
views
Progeria samples DNA WGBS
Progeria
updated 15 months ago by
Ram
45k • written 15 months ago by
Ivan
▴ 10
0
votes
0
replies
419
views
Extracting SNPs from UKBB TOPMED imputation
Nexus
Biobank
DNA
TopMed
UK
15 months ago by
Harry
• 0
0
votes
1
reply
643
views
Comparing Gene Expression Before and After Treatment Using Nanopore Sequencing Data
sequencing
normalisation
nanopore
15 months ago by
Dim
• 0
2
votes
6
replies
1.2k
views
Sorting repetitive Gene Ontology entries in one line
Gene-Ontology
updated 15 months ago by
Ram
45k • written 15 months ago by
resug
▴ 40
0
votes
0
replies
568
views
News:
ONLINE COURSE – Introduction to Single Cell Analysis (ISCA01)
Trailmaker
Single-cell
RNA-seq
scRNA-seq
updated 15 months ago by
Ram
45k • written 15 months ago by
oliverhooker
▴ 110
0
votes
0
replies
508
views
News:
ONLINE COURSE – Genome Assembly and Annotation (GAAA01)
Annotation
Genome
Assembly
Genomics
updated 15 months ago by
Ram
45k • written 15 months ago by
oliverhooker
▴ 110
0
votes
0
replies
583
views
News:
ONLINE COURSE – Introduction to Metabarcoding and Metagenomics Analysis (IMAM01)
Metabarcoding
Metagenomics
updated 15 months ago by
GenoMax
153k • written 15 months ago by
oliverhooker
▴ 110
0
votes
2
replies
736
views
News:
ONLINE COURSE – Metabarcoding Pipelines for Eukaryotic Communities
Metabarcoding
Eukaryotes
updated 15 months ago by
Ram
45k • written 15 months ago by
oliverhooker
▴ 110
0
votes
4
replies
959
views
Error: Encountered internal Bowtie 2 exception (#1)
Bowtie2
updated 15 months ago by
GenoMax
153k • written 15 months ago by
gabriel
• 0
0
votes
2
replies
684
views
Error installing ACTIONet
R
12 months ago by
sidrah.maryam
▴ 70
0
votes
1
reply
541
views
Using SSL (Secure Sockets Layer) for PHG
ssl
PHG
updated 15 months ago by
lcj34
▴ 420 • written 15 months ago by
chakhouski.artur
• 0
3
votes
5
replies
2.0k
views
Calling variants/SNP for single-cell RNA-seq data
SNP
scRNAseq
updated 13 months ago by
yura.grabovska
▴ 820 • written 15 months ago by
QX
▴ 80
0
votes
1
reply
1.1k
views
difficulties in using HADDOCK 2.4 for protein-ligand docking
ligand
updated 15 months ago by
래건
• 0 • written 2.5 years ago by
barbarainb
• 0
1
vote
0
replies
550
views
News:
"Introduction to Deep Learning for Biologists" - Online Course (30 Sep - 4 Oct 2024)
Deep-Learning
Machine-Learning
Python
CNN
updated 15 months ago by
Ram
45k • written 15 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
645
views
Split Seurat assay into two assays
R
Seurat
updated 15 months ago by
Ram
45k • written 15 months ago by
solo.albif
• 0
2
votes
3
replies
874
views
Fastq with 2 presence of adapter sequences
FASTQC
updated 15 months ago by
GenoMax
153k • written 15 months ago by
Armando
• 0
0
votes
7
replies
1.4k
views
6 follow
Bulk RNA-Seq Data That's Only Tumors (No Normal/Reference)?
RNA-Seq
DEA
updated 15 months ago by
Ram
45k • written 15 months ago by
James
• 0
1
vote
1
reply
616
views
Ranking the GSEA Results
log2FC
p-value
DESeq2
GSEA
updated 15 months ago by
dthorbur
★ 3.1k • written 15 months ago by
V_Vibes
▴ 10
0
votes
1
reply
569
views
Does it make sense to do hdWGCNA following the DEG analysis?
DEG
WGCNA
single-cell
updated 14 months ago by
edoardofilippi1998
• 0 • written 15 months ago by
paria
▴ 110
0
votes
0
replies
333
views
Define outliers in proportional difference in scRNAseq analysis
scRNA-seq
updated 15 months ago by
Ram
45k • written 15 months ago by
Yuzu776
• 0
2
votes
2
replies
918
views
Understanding dimred in scater for scRNASeq
SingleCellExperiment
fastmnn
scater
scRNASeq
updated 15 months ago by
jared.andrews07
★ 19k • written 15 months ago by
sp
• 0
0
votes
2
replies
773
views
Monocle3 - gene expression dot plot (ggplot2 equivalent)
monocle3
ggplot2
data-visualization
updated 15 months ago by
gglim
▴ 220 • written 15 months ago by
seattlescientist_01
• 0
2
votes
0
replies
527
views
Blog:
Investigating male X heterozygosity in short read sequencing
heterozygosity
nextflow
sequencing
chrX
15 months ago by
barslmn
★ 2.4k
0
votes
1
reply
1.5k
views
Bismark Report Merging
methylation
bismark
wbgs
updated 15 months ago by
Ram
45k • written 4.3 years ago by
maxrhighsmith
▴ 10
1
vote
3
replies
737
views
How to carry out cell deconvolution GIVEN known cell proportions already?
deconvolution
14 months ago by
Rashid
• 0
1
vote
0
replies
490
views
News:
Course: Analysing Biodiversity Through Time and Space using R
R
Biodiversity-Data
updated 15 months ago by
Ram
45k • written 15 months ago by
Physalia-courses
★ 2.6k
0
votes
1
reply
470
views
miRDeep2 problem with miRNA ID's
miRNA
miRDeep2
updated 15 months ago by
GenoMax
153k • written 15 months ago by
Ornella Stefanía
• 0
0
votes
3
replies
908
views
Create a GenBank file for a novel organism
pathway
genome
assembly
annotation
14 months ago by
scarface
• 0
0
votes
1
reply
614
views
Understanding Discrepancies in Deduplication Rates Between Forward and Reverse Reads in Metagenomic Data
metagenomics
deduplicate
updated 15 months ago by
Ram
45k • written 15 months ago by
Stiofan
▴ 20
0
votes
3
replies
780
views
Changing unknown transcript identifiers in RNASeq data to gene names
RNAseq
updated 15 months ago by
i.sudbery
22k • written 15 months ago by
jasminestaples1
• 0
0
votes
1
reply
959
views
Downloading 10X Spatial Transcriptomic Data from GEO
GEO
Spatial-Trascriptomics
single-cell
updated 15 months ago by
GenoMax
153k • written 15 months ago by
biocellbio
• 0
1
vote
1
reply
749
views
Prokka annotation
Prokka
updated 15 months ago by
Joe
22k • written 15 months ago by
Cancerplse
• 0
121,929 results • Page
95 of 2439
Recent Votes
Comment: Orthofinder Not Mapping to Any Orthogroups
Comment: Looking to learn practical bioinformatics
Comment: Looking to learn practical bioinformatics
C: report only primary alignment BWA-MEM
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Genome Assembly QC from BAM files
Answer: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
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• 0
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Recent Replies
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
• 0
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
• 0
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
Comment: Looking to learn practical bioinformatics
by
GenoMax
153k
This (or a variation) question is asked every so often. You may want to take a look at these past threads and the discussions in there to g…
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
GenoMax
153k
It is an investment in time and will ensure that there is no extraneous sequence is present, if you choose to do scanning/trimming. That …
Comment: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
saruman
▴ 10
It is astonishing that there is no straightforward way to match accessions and their host. Anyhow, I will use `datasets` as suggested, thou…
Comment: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
Mensur Dlakic
★ 30k
Always good to learn new things.
Comment: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
GenoMax
153k
> I don't think there are any host links in NCBI records This information is not available for all genomes, but it is there for some of th…
Answer: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
Mensur Dlakic
★ 30k
As you said, the package does not support the search for hosts. Furthermore, I don't think there are any host links in NCBI records, so it …
Answer: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
GenoMax
153k
There may be a better answer, but let us start here. This is a two (or more step) solution using NCBI `datasets` ([**LINK**][1]). NOTE: I…
Answer: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
Vittorio
• 0
Joining the convo a bit late, but I found it super useful since I am struggling to analyze MGI data myself. For the library prep used in th…
Comment: How to overcome OS return value: 4 with SPAdes
by
marongiu.luigi
▴ 760
Yep, that was it. I was using a G:-sync folder... Thank you.
Comment: Help with Model
by
i.sudbery
22k
There is no way to "code" this directly. Your problem is mathematics, not programming. Standard stochastic models deal with a set of sta…
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