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121,929 results • Page
94 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
325
views
How to get human-macaque homologues table from UCSC?
homologues
UCSC
genome
alignment
gene
15 months ago by
Vullnet
• 0
0
votes
2
replies
1.2k
views
error in CIBERSORTx
cibersortx
updated 14 months ago by
Ram
45k • written 15 months ago by
Emilio Luis
• 0
0
votes
0
replies
284
views
Freebayes VCF Post-Calling Filter Optimization: Schizophrenia Gene Panel Insights
vcf
15 months ago by
Lukas
▴ 130
0
votes
1
reply
610
views
fastp error in adapter or primer trimming
NGS
fastp
trimmomatic
updated 15 months ago by
Ram
45k • written 15 months ago by
microorganism_001
▴ 30
0
votes
1
reply
621
views
Would anyone have the Tax4Fun2 Script?
Tax4Fun2
updated 15 months ago by
Ram
45k • written 15 months ago by
Petrônio
• 0
1
vote
1
reply
616
views
Differential expression bias in Seurat
markers
seurat
scRNA-seq
single-cell
updated 15 months ago by
jared.andrews07
★ 19k • written 15 months ago by
sleepystudent
• 0
1
vote
5
replies
1.1k
views
whole genome seq for Gazelle - assemble mitochondria
mammals
mitochondrial-genome
15 months ago by
m90
▴ 30
0
votes
1
reply
573
views
Question on heterozygosity
heterozygosity
population-genetics
updated 15 months ago by
Ram
45k • written 15 months ago by
Lemonhope
▴ 10
0
votes
2
replies
4.6k
views
Filtering seurat object
seurat
scRNA
15 months ago by
marco.barr
▴ 180
2
votes
4
replies
1.4k
views
What is the difference between Enrichr and ShinyGO? Which one is the best?
biotools
Enrichr
shinyGO
14 months ago by
mr.onkology
• 0
3
votes
3
replies
1.2k
views
htseq, stringtie, featurecounts all not working on nanopore direct RNA
stringtie
minimap2
htseq
quantification
nanopore
updated 15 months ago by
colindaven
7.9k • written 15 months ago by
CL
• 0
0
votes
0
replies
503
views
News:
Two weeks left to apply for the Science & SciLifeLab Prize For Young Scientists
Science
early
Scilifelab
career
prize
15 months ago by
Matthias Zepper
5.1k
0
votes
0
replies
465
views
CARD RGI BWT issues [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
RGI
CARD
15 months ago by
laujihen
• 0
2
votes
2
replies
643
views
presigned URL in score-client
icgc
15 months ago by
Javier
• 0
0
votes
1
reply
800
views
Creating a Single-Cell Signature Matrix for Bulk RNA-seq Deconvolution
rna-seq
signature
deconvolution
single-cell
updated 15 months ago by
Ram
45k • written 15 months ago by
Lloyd98
• 0
0
votes
0
replies
865
views
Job:
PhD position: Deciphering molecular mechanisms of acute kidney injury (AKI) to chronic kidney disease (CKD) transition
python
ckd
omics
drug-development
14 months ago by
D4office
• 0
0
votes
0
replies
365
views
FRASER error
bioconductor
jaccard
FRASER
r
updated 15 months ago by
zx8754
12k • written 15 months ago by
smanzano250800
• 0
0
votes
0
replies
278
views
Calculating Change Scores for Longitudinal RNA-Seq Data
change-score
delta
RNA-Seq
updated 15 months ago by
Ram
45k • written 15 months ago by
jari.karppinen
• 0
4
votes
3
replies
893
views
Any recommended way to view scRNAseq results in an interactive format?
RNA-seq
single-cell
14 months ago by
Pei
▴ 240
0
votes
1
reply
1.1k
views
How to open AlphaFold .pkl files
pkl
alphafold
updated 15 months ago by
Mensur Dlakic
★ 30k • written 15 months ago by
fvasquez
• 0
2
votes
4
replies
1.3k
views
Upward Sloping P Value Distribution in ATAC-seq Analysis
ATAC-seq
DEseq2
edgeR
limma
updated 14 months ago by
Devon Ryan
105k • written 15 months ago by
jbern
• 0
2
votes
0
replies
611
views
Job:
Postdoc Opportunity in Bioinformatics at Northwestern University (Research on Human Pregnancy and Autoimmunity)
RNA-seq
scRNA-seq
updated 15 months ago by
Ram
45k • written 15 months ago by
DJ
▴ 20
0
votes
4
replies
1.7k
views
UCSC Genome Browser Custom Track Blank
customtrack
UCSC
chipseq
updated 14 months ago by
Maximilian Haeussler
★ 1.8k • written 22 months ago by
Daniel
▴ 30
8
votes
5
replies
1.7k
views
Visualizing human genomic loci
Genome
visualization
updated 15 months ago by
brianlee
▴ 10 • written 18 months ago by
James
▴ 30
3
votes
11
replies
2.5k
views
Reporting of multimapping reads by STAR and Hisat2
STAR
Hisat2
multimapper
updated 15 months ago by
rfran010
★ 1.6k • written 15 months ago by
predeus
★ 2.1k
1
vote
6
replies
1.1k
views
Chip-Seq and DEGS
ChIP-Seq
15 months ago by
Zeke
• 0
2
votes
3
replies
939
views
Strange peaks in normalized FPKM data
gene-expression
FPKM
15 months ago by
Cathy
• 0
4
votes
3
replies
979
views
single cell RNA sequencing and mitochondrial percent
mitochondria
scRNAseq
updated 15 months ago by
Zhenyu Zhang
★ 1.3k • written 15 months ago by
kayah
▴ 20
1
vote
2
replies
699
views
NA is p-valueas & p.adj in DESeq2
FDR
DEG
p-value
DESeq2
15 months ago by
Milly
• 0
0
votes
2
replies
854
views
Nucleotide diversity and TajimaD from SNPs
GATK
TajimaD
vcf
updated 15 months ago by
Ram
45k • written 15 months ago by
BioD
• 0
3
votes
4
replies
1.4k
views
How to find genes with altered CNV from CNVkit output?
wes
cnv
wgs
ngs
14 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
369
views
Next Steps for NUMTs Identification and Analysis
pacBio
Numts
mtDNA
15 months ago by
hashim.rana11
▴ 40
1
vote
3
replies
821
views
HOW TO REDUCE GENES FOR CYTOSCAPE
Cytoscape
Genes
TF
updated 15 months ago by
Ram
45k • written 15 months ago by
Tiara
• 0
0
votes
2
replies
697
views
Converting GRCh38 30× 1000G data to GRCh37
bam
1000Genomes
alignment
updated 15 months ago by
Ram
45k • written 15 months ago by
devenvyas
▴ 770
2
votes
2
replies
671
views
retrieve assembly accession from genome accession
Assembly
Genomics
15 months ago by
Cynthia14159
• 0
0
votes
5
replies
3.0k
views
Is there a way to install Python version 2 on Mac with M3 chips?
NGS
Python
updated 15 months ago by
gernophil
▴ 130 • written 15 months ago by
xiaoleiusc
▴ 140
0
votes
0
replies
476
views
News:
Online course: RNAseq data analysis with R/Bioconductor
R
Bioconductor
RNA-seq
Differential-Expression-Analysis
updated 15 months ago by
Ram
45k • written 15 months ago by
Physalia-courses
★ 2.6k
0
votes
1
reply
680
views
whole genome seq for Gazelle - assemble mitochondria
WGS
DNA
reference
updated 15 months ago by
colindaven
7.9k • written 15 months ago by
m90
▴ 30
0
votes
0
replies
397
views
NO sequence type of bacteria revealed using mlst package
Assembly
Sequencing
Genomics
15 months ago by
Mohamed Samir
▴ 30
1
vote
2
replies
771
views
How to install python package scMultiCluster_kmeans_totalVI?
conda
gpu
multiomics
google-colab
single-cell
15 months ago by
KABILAN
▴ 130
0
votes
3
replies
986
views
Where does cellranger log its estimates for the input to DETECT_COUNT_CHEMISTRY?
cellranger
sequencing
single-cell
updated 15 months ago by
ATpoint
89k • written 15 months ago by
mk
▴ 310
0
votes
1
reply
669
views
ChIPseeker annotation
ChIPseeker
ChIP-seq
updated 15 months ago by
Nitin Narwade
★ 1.7k • written 15 months ago by
sk_24
• 0
4
votes
4
replies
1.9k
views
How to install dependencies in conda environment in Google colab?
conda
gpu
multiomics
google-colab
single-cell
updated 15 months ago by
Michael
56k • written 15 months ago by
KABILAN
▴ 130
1
vote
0
replies
488
views
Scale independence plots in WGCNA
network
scale-free-model
WGCNA
updated 15 months ago by
Ram
45k • written 15 months ago by
Harini
▴ 10
1
vote
0
replies
401
views
How do I integrate metabolic and microbiome data?
microbiome
updated 15 months ago by
Ram
45k • written 15 months ago by
Priyal
▴ 10
4
votes
4
replies
1.1k
views
Post-calling vcf filtration
vcf
15 months ago by
Lukas
▴ 130
0
votes
0
replies
411
views
Good books or review papers on mendelian randomization and eQTLs?
eQTL
randomization
mendelian
15 months ago by
_quantum_girl_
▴ 60
2
votes
4
replies
1.2k
views
Two different RNA sequencing sets that have gene names set up differently - how to normalize?
R
RNA-Sequencing
14 months ago by
awsk
• 0
0
votes
1
reply
614
views
Help with phylogenetic analysis
Phylogenetic-analysis
genome
updated 15 months ago by
Mensur Dlakic
★ 30k • written 15 months ago by
KaTi
• 0
1
vote
2
replies
786
views
How to install BioNano Access tool to visualize Bionano optical map outputs?
bionano
genome
optical-map
updated 6 weeks ago by
eebloom
▴ 110 • written 15 months ago by
BioinfoBee
• 0
121,929 results • Page
94 of 2439
Recent Votes
Comment: Looking to learn practical bioinformatics
Comment: Looking to learn practical bioinformatics
C: report only primary alignment BWA-MEM
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Genome Assembly QC from BAM files
Answer: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
Comment: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
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Recent Replies
Comment: Looking to learn practical bioinformatics
by
Upesh
• 0
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
• 0
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
Comment: Looking to learn practical bioinformatics
by
GenoMax
153k
This (or a variation) question is asked every so often. You may want to take a look at these past threads and the discussions in there to g…
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
GenoMax
153k
It is an investment in time and will ensure that there is no extraneous sequence is present, if you choose to do scanning/trimming. That …
Comment: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
saruman
▴ 10
It is astonishing that there is no straightforward way to match accessions and their host. Anyhow, I will use `datasets` as suggested, thou…
Comment: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
Mensur Dlakic
★ 30k
Always good to learn new things.
Comment: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
GenoMax
153k
> I don't think there are any host links in NCBI records This information is not available for all genomes, but it is there for some of th…
Answer: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
Mensur Dlakic
★ 30k
As you said, the package does not support the search for hosts. Furthermore, I don't think there are any host links in NCBI records, so it …
Answer: Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to
by
GenoMax
153k
There may be a better answer, but let us start here. This is a two (or more step) solution using NCBI `datasets` ([**LINK**][1]). NOTE: I…
Answer: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
Vittorio
• 0
Joining the convo a bit late, but I found it super useful since I am struggling to analyze MGI data myself. For the library prep used in th…
Comment: How to overcome OS return value: 4 with SPAdes
by
marongiu.luigi
▴ 760
Yep, that was it. I was using a G:-sync folder... Thank you.
Comment: Help with Model
by
i.sudbery
22k
There is no way to "code" this directly. Your problem is mathematics, not programming. Standard stochastic models deal with a set of sta…
Answer: How to overcome OS return value: 4 with SPAdes
by
GenoMax
153k
I am going to hazard a guess that the spaces and email address in file path (you may want to redact your email from post above) is causing …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
153k
Are you trying to reproduce the assembly result? If not, the complete assembly is already available at NCBI: https://www.ncbi.nlm.nih.gov…
Comment: Genome Assembly QC from BAM files
by
GenoMax
153k
This may be another example where the assembly you obtained may be better than an existing one .. certainly as far as the accessory chromos…
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