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3
votes
2
replies
677
views
How can I convert this pairwise format to fasta?
fasta python bash
updated 16 months ago by 143k • written 16 months ago by ▴ 170
0
votes
1
reply
474
views
Remove duplicates in multifasta, where entries are paired
bash python
updated 16 months ago by ★ 2.0k • written 16 months ago by ▴ 170
5
votes
3
replies
817
views
Tool for aligning short protein sequences
protein alignment
updated 16 months ago by 11k • written 16 months ago by ▴ 170
0
votes
0
replies
817
views
Comment: Comment: Tool for aligning short protein sequences
16 months ago by SaltedPork ▴ 170
1
vote
2
replies
509
views
How to swap fasta entrys in a fasta file?
awk fasta bash sed
updated 16 months ago by 13k • written 16 months ago by ▴ 170
0
votes
0
replies
509
views
Answer: Answer: How to swap fasta entrys in a fasta file?
16 months ago by SaltedPork ▴ 170
0
votes
1
reply
713
views
Comment: Comment: Bowtie2 not putting /2 /1 at the end of paired reads in SAM file
17 months ago by SaltedPork ▴ 170
3
votes
3
replies
713
views
Bowtie2 not putting /2 /1 at the end of paired reads in SAM file
alignment bowtie
updated 17 months ago by 101k • written 17 months ago by ▴ 170
3
votes
1
reply
512
views
How to split fasta file by ID, making sure to keep two entrys in each file
fasta split seqkit bash
updated 17 months ago by 101k • written 17 months ago by ▴ 170
0
votes
0
replies
872
views
Job: Senior Bioinformatician at Barts Health London
london Bioinformatician Senior
17 months ago by SaltedPork ▴ 170
2
votes
3
replies
916
views
Extract alignment in fasta format from BAM/SAM file
alignment bam
updated 17 months ago by 101k • written 17 months ago by ▴ 170
6
votes
3
replies
802
views
Modifying FASTQ header
sed fastq awk
updated 20 months ago by ▴ 60 • written 20 months ago by ▴ 170
7
votes
4
replies
1.1k
views
Automating pipeline with Parallel, read files in separate folders
fastq automation bash parallel
updated 2.0 years ago by ★ 4.4k • written 2.0 years ago by ▴ 170
1
vote
2
replies
831
views
Replace fasta ID with value from TSV file (sed with special characters)
sed
updated 2.6 years ago by 21k • written 2.6 years ago by ▴ 170
1
vote
1
reply
656
views
Software/package that can visualise amino acid mutations against a reference genome
mutations visualisations
3.3 years ago by SaltedPork ▴ 170
0
votes
2
replies
1.1k
views
How to create coverage graph/plot for an entire Illumina run
coverage r bam graph plot
3.5 years ago by SaltedPork ▴ 170
0
votes
1
reply
880
views
Convert the NT position in a VCF file to an AA position
ivar vcf gff
3.7 years ago by SaltedPork ▴ 170
0
votes
3
replies
1.6k
views
Using GNU Parallel to read arguments into a bash script
gnu parallel bash
3.7 years ago by SaltedPork ▴ 170
0
votes
1
reply
1.6k
views
Comment: C: Using GNU Parallel to read arguments into a bash script
3.7 years ago by SaltedPork ▴ 170
1
vote
2
replies
5.9k
views
Having trouble with Seqkit Replace, trying to rename fasta headers from file
seqkit
updated 3.9 years ago by ★ 1.5k • written 4.3 years ago by ▴ 170
0
votes
0
replies
3.9k
views
Comment: C: GPU based parallel processing in genomics tools
4.7 years ago by SaltedPork ▴ 170
0
votes
0
replies
3.6k
views
Answer: A: SSD or HHD for genome analisys
4.7 years ago by SaltedPork ▴ 170
6
votes
7
replies
3.3k
views
Rename FASTA headers based on filename
bash
updated 5.1 years ago by ★ 2.2k • written 5.1 years ago by ▴ 170
0
votes
1
reply
3.3k
views
Comment: C: Rename fasta headers from CSV
5.1 years ago by SaltedPork ▴ 170
0
votes
0
replies
3.3k
views
Comment: C: Rename fasta headers from CSV
5.1 years ago by SaltedPork ▴ 170
0
votes
1
reply
3.3k
views
Comment: C: Rename fasta headers from CSV
5.1 years ago by SaltedPork ▴ 170
16
votes
11
replies
3.3k
views
Rename fasta headers from CSV
bash perl python
updated 2.1 years ago by ★ 2.2k • written 5.1 years ago by ▴ 170
0
votes
0
replies
2.5k
views
Comment: A: Benchmarking GPUs with ONT Guppy 3.0
5.1 years ago by SaltedPork ▴ 170
1
vote
1
reply
2.0k
views
Answer: A: Testing Illumina reads for contamination
5.1 years ago by SaltedPork ▴ 170
0
votes
0
replies
2.2k
views
Answer: A: How to trim both pair end reads and remove low quality reads
5.2 years ago by SaltedPork ▴ 170
5
votes
10
replies
9.7k
views
Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
bwa BWA bwa-index
updated 5.9 years ago by • 0 • written 7.7 years ago by ▴ 170
0
votes
0
replies
1.7k
views
Answer: A: How do you use BLAST?
6.1 years ago by SaltedPork ▴ 170
4
votes
7
replies
1.2k
views
How to get list of different bases and their positions from an alignment?
alignment
updated 6.1 years ago by 47k • written 6.1 years ago by ▴ 170
0
votes
1
reply
1.2k
views
Comment: C: How to get list of different bases and their positions from an alignment?
6.1 years ago by SaltedPork ▴ 170
0
votes
1
reply
1.2k
views
Comment: C: How to get list of different bases and their positions from an alignment?
6.1 years ago by SaltedPork ▴ 170
0
votes
0
replies
1.1k
views
In Jalview, how can I colour just the nucleotides that are different between sequences
alignment jalview
6.1 years ago by SaltedPork ▴ 170
1
vote
0
replies
6.6k
views
Answer: A: Interesting/useful/beautiful bio sequence viz tools
6.2 years ago by SaltedPork ▴ 170
33
votes
11
replies
11k
views
Getting a bash pipeline to output non-zero exit code when a step fails
bash command-line sh
updated 6.3 years ago by ★ 3.4k • written 6.3 years ago by ▴ 170
0
votes
2
replies
11k
views
Comment: C: Getting a bash pipeline to output non-zero exit code when a step fails
6.3 years ago by SaltedPork ▴ 170
0
votes
0
replies
2.1k
views
Comment: C: How to convert string into fasta using bash?
6.3 years ago by SaltedPork ▴ 170
7
votes
4
replies
2.1k
views
How to convert string into fasta using bash?
fasta perl bash string
updated 6.3 years ago by 162k • written 6.3 years ago by ▴ 170
0
votes
2
replies
4.2k
views
Comment: C: Any ideas on converting IUPAC ambiguity codes in a fasta file
6.3 years ago by SaltedPork ▴ 170
10
votes
8
replies
4.2k
views
Any ideas on converting IUPAC ambiguity codes in a fasta file
fasta iupac regex perl bash
updated 2.4 years ago by • 0 • written 6.3 years ago by ▴ 170
0
votes
0
replies
6.2k
views
Answer: A: Exception in thread "main" java.io.FileNotFoundException
6.3 years ago by SaltedPork ▴ 170
0
votes
3
replies
1.5k
views
Jalview crashes when I resize window, any fixes?
jalview
updated 6.4 years ago by ▴ 100 • written 7.6 years ago by ▴ 170
11
votes
9
replies
2.9k
views
Getting files from BaseMount (Using find command to loop through the symlinks)
basemount basespace
updated 6.4 years ago by ★ 3.5k • written 6.4 years ago by ▴ 170
0
votes
0
replies
2.9k
views
Comment: C: Getting files from BaseMount (Using find command to loop through the symlinks)
6.4 years ago by SaltedPork ▴ 170
0
votes
2
replies
2.9k
views
Comment: C: Getting files from BaseMount (Using find command to loop through the symlinks)
6.4 years ago by SaltedPork ▴ 170
1
vote
0
replies
2.4k
views
Comment: C: I'm putting a pipeline into docker, where do I store the tar files for my depend
6.4 years ago by SaltedPork ▴ 170
0
votes
1
reply
2.4k
views
Comment: C: I'm putting a pipeline into docker, where do I store the tar files for my depend
6.4 years ago by SaltedPork ▴ 170
78 results • Page 1 of 2
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