Limit : this month
all time today this week this month this year
300 results • Page 2 of 6
Sort: Rank
Rank Views Votes Replies
4
votes
3
replies
727
views
Forum: When to ask for rerun from vendors
ngs-vendor
updated 4 days ago by 39k • written 3.7 years ago by ★ 1.9k
4
votes
12
replies
1.2k
views
Forum: publicly available data
arrayexpress GEO SRA
updated 1 day ago by 39k • written 3.7 years ago by ▴ 110
3
votes
8
replies
2.7k
views
6 follow
Forum: SSD or HHD for genome analysis
hardware genome sequencing
updated 1 day ago by 39k • written 3.7 years ago by ▴ 10
2
votes
7
replies
897
views
Forum: Future prospects: NGS vs Gene editing (using CRISPR CAS9, AAVs and similar methods)
NGS CRISPR-Cas9
updated 1 day ago by 39k • written 3.7 years ago by ▴ 120
1
vote
0
replies
676
views
Forum: What are the 10 most exciting developments on the horizon in precision medicine?
precision-medicine
updated 1 day ago by 39k • written 3.7 years ago by ★ 2.9k
3
votes
2
replies
5.7k
views
Forum: Best book for learning Next-Generation Sequencing Data Analysis?
ngs
updated 18 days ago by 39k • written 5.3 years ago by ★ 1.2k
21
votes
15
replies
1.5k
views
9 follow
Forum: Working abroad without a PhD
career
updated 1 day ago by 39k • written 3.7 years ago by ★ 1.4k
13
votes
4
replies
984
views
Forum: The shortcoming of shiny app in building webserver
R shiny webserver
updated 4 days ago by 39k • written 3.7 years ago by ▴ 110
1
vote
3
replies
722
views
Forum: The pStacks module of Stacks has been removed?
software-error
updated 4 days ago by 39k • written 3.8 years ago by ▴ 20
3
votes
3
replies
905
views
Forum: Large Multi-omics Project -- Dev Approach
snp RNA-Seq sequencing
updated 4 days ago by 39k • written 3.8 years ago by ▴ 10
4
votes
5
replies
1.2k
views
7 follow
Forum: Career related query
MSc career
updated 11 days ago by 39k • written 4.5 years ago by ▴ 10
12
votes
4
replies
1.3k
views
Forum: Bioinformatics and biotechnology market in future.
genome next-gen
updated 4 days ago by 39k • written 3.8 years ago by • 0
3
votes
0
replies
879
views
Forum: Good books on application of Machine Learning in Bioinformatics
book machine-learning
updated 4 days ago by 39k • written 3.8 years ago by ▴ 180
0
votes
2
replies
1.1k
views
Forum: What should I choose between a thesis and a project for masters in bioinformatics?
thesis project
updated 4 days ago by 39k • written 3.8 years ago by ▴ 70
115
votes
35
replies
38k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow
updated 25 days ago by 39k • written 6.0 years ago by ▴ 760
4
votes
0
replies
915
views
Forum: Plotting Ensembl gene name changes between versions
R ensembl
updated 4 days ago by 39k • written 3.8 years ago by ▴ 550
37
votes
21
replies
10k
views
10 follow
Forum: Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 12 days ago by 39k • written 4.6 years ago by 7.9k
1
vote
2
replies
804
views
Forum: What Are The Big Problems/Current Trends In Proteomics?
proteomics sequencing
updated 5 days ago by 39k • written 3.9 years ago by • 0
3
votes
4
replies
2.8k
views
6 follow
Forum: Links for forums or discussion groups about machine learning, aging, genomics and artificial intelligence?
genome
updated 18 days ago by 39k • written 5.3 years ago by ▴ 50
0
votes
4
replies
1.7k
views
Forum: Multiple Sequence Alignment Applications
snp
updated 5 days ago by 39k • written 3.9 years ago by • 0
4
votes
13
replies
1.3k
views
Forum: Looking for Participants: Meenta NovaSeq RunShare Beta
RunShare next-gen NovaSeq
updated 5 days ago by 39k • written 3.9 years ago by ▴ 10
2
votes
5
replies
1.4k
views
Forum: Looking for co-author with Bioinformatics background for paper using Machine Learning in Biology
neural-networks lncRNA RNN FEELnc
updated 13 days ago by 39k • written 4.7 years ago by ▴ 20
14
votes
10
replies
1.6k
views
Forum: WGBS alignment with BitMapperBS
BitMapperBS bismark
updated 5 days ago by 39k • written 3.9 years ago by ★ 9.3k
13
votes
6
replies
940
views
Forum: To Cloud or Not to Cloud - Privacy implications of genetic data sharing
security diagnostics DNA-Seq
updated 7 days ago by 39k • written 3.9 years ago by 9.9k
0
votes
1
reply
745
views
Forum: Tools and data for plant proteins
alignment sequencing
updated 6 days ago by 39k • written 3.9 years ago by • 0
14
votes
5
replies
6.1k
views
Forum: Seurat vs Monocle
R RNA-Seq next-gen single-cell
updated 5 days ago by 39k • written 3.9 years ago by 3.2k
5
votes
3
replies
712
views
Forum: price of MSI detection by NGS for 1 person
next-gen
updated 6 days ago by 39k • written 3.9 years ago by ▴ 20
3
votes
2
replies
604
views
Forum: Application suggestions for slackbot
slack
updated 6 days ago by 39k • written 4.0 years ago by ★ 2.1k
11
votes
13
replies
3.5k
views
6 follow
Forum: NGS Data storage solutions for small organisations or big labs
big-data HTS storage NGS metagenomics
updated 6 days ago by 39k • written 4.0 years ago by ▴ 830
1
vote
5
replies
1.2k
views
Forum: PhD: Research interest or better program?
PhD
updated 6 days ago by 39k • written 4.0 years ago by • 0
11
votes
5
replies
4.2k
views
Forum: Bioinformatics Workstation Suggestions
RNA-Seq next-gen workstation
updated 6 days ago by 39k • written 4.0 years ago by ▴ 90
12
votes
13
replies
1.8k
views
6 follow
Forum: Recovering bam files after unknown deletion in the storage
photorec bam sequencing
updated 6 days ago by 39k • written 4.0 years ago by ▴ 70
1
vote
1
reply
941
views
Forum: Companies and salary for a PhD in Drug Design in Asia
salary drug-design
updated 6 days ago by 39k • written 4.0 years ago by • 0
1
vote
1
reply
1.5k
views
Forum: Free Bioinformatics Training Resources (for non-bioinformaticians)
RNA-Seq
updated 6 days ago by 39k • written 4.0 years ago by ▴ 340
4
votes
4
replies
1.4k
views
Forum: When will the hg19/grch37 finally become obsolete?
Reference-Genome
updated 6 days ago by 39k • written 4.0 years ago by ▴ 10
3
votes
1
reply
826
views
Forum: Recommend papers: automated vs manual downstream analysis
downstream-analysis reproducibility
updated 6 days ago by 39k • written 4.1 years ago by ▴ 110
0
votes
0
replies
615
views
Forum: Survey for job context
survey interview
updated 6 days ago by 39k • written 4.0 years ago by • 0
4
votes
0
replies
3.3k
views
Forum: How can unique molecular identifiers (UMIs) help to reduce quantitative biases?
NGS Variant-Calling Unique-Molecular-Identifier
updated 6 days ago by 39k • written 4.0 years ago by 9.9k
11
votes
5
replies
1.2k
views
Forum: What bioinformatic training?
training RNA-Seq illumina
updated 6 days ago by 39k • written 4.0 years ago by ▴ 150
5
votes
5
replies
2.0k
views
Forum: BCL files as deliverables from a sequencing center
core-facility service-provider
updated 6 days ago by 39k • written 4.0 years ago by 5.2k
4
votes
4
replies
990
views
Forum: What skills are required for an informatics scientist?
informatics scientist
updated 6 days ago by 39k • written 4.0 years ago by ★ 9.3k
0
votes
1
reply
806
views
Forum: An idea for a project in ML
ML matlab machine-learning data-science
updated 6 days ago by 39k • written 4.1 years ago by • 0
10
votes
4
replies
5.4k
views
Forum: Bioinformatics: Which language should I learn
programming
updated 7 days ago by 39k • written 4.1 years ago by • 0
3
votes
7
replies
766
views
Forum: Construct a small computing server for GWAS Analysis
assembly
updated 7 days ago by 39k • written 4.1 years ago by ▴ 60
1
vote
1
reply
538
views
Forum: Whither my badges?
meta
updated 7 days ago by 39k • written 4.1 years ago by ★ 1.9k
2
votes
3
replies
664
views
Forum: What are the major types of choices that affect an analysis?
reproducibility
updated 7 days ago by 39k • written 4.1 years ago by 21k
5
votes
2
replies
1.0k
views
Forum: ISMB bioinfo-core workshop call for lightning talks
conferences
updated 7 days ago by 39k • written 4.1 years ago by 5.3k
7
votes
9
replies
1.2k
views
Forum: 10 Most important topic in Human evolutionary genomics
evolutionary-genomics evolutionary-medicine
updated 7 days ago by 39k • written 4.2 years ago by ▴ 40
113
votes
53
replies
5.3k
views
16 follow
Forum: Middle author, but not first author projects. How would you approach this?
authorship career-development
updated 7 days ago by 39k • written 4.2 years ago by ▴ 170
1
vote
3
replies
826
views
Forum: Poorly designed "omics" experiment
RNA-Seq next-gen ChIP-Seq
updated 7 days ago by 39k • written 4.2 years ago by ▴ 100
300 results • Page 2 of 6
Recent Votes
A: Extract Reads From A Bam File That Fall Within A Given Region
Comment: Masking before RNA-Seq Alignment and Gene Prediction in Plant Genomes
Comment: Alignment of case vs. control from different origin
A: understanding bedtools coverage output
Answer: Alignment of case vs. control from different origin
Comment: Alignment of case vs. control from different origin
Comment: Gene prediction software
Recent Locations • All
Germany, 4 minutes ago
United States, 4 minutes ago
Germany, 4 minutes ago
China, 5 minutes ago
Australia, 5 minutes ago
London, 5 minutes ago
Egypt, 6 minutes ago
Recent Awards • All
Scholar to rpolicastro 12k
Teacher to i.sudbery 17k
Scholar to Joel Wallenius ▴ 130
Supporter to Meisam ▴ 180
Popular Question to Pegasus ▴ 90
Popular Question to resug ▴ 30
Scholar to JC 13k
Recent Replies
Comment: Differential protein expression analysis by Ribo ▴ 40
Thank you! Is there a recommended tutorial for proteomics analysis?
Comment: Limma returned only positive logFC values by melissachua90 ▴ 40
I clustered the samples into subtypes and am now comparing the differential expression across the subtypes.
Answer: Limma returned only positive logFC values by Gordon Smyth ★ 6.1k
No, your code isn't correct. You are testing an intercept equal to zero instead of testing for a logFC. I wonder what comparison you were t…
Answer: Extract sequences from a fastq file by a list of IDs by GenoMax 129k
Using `filterbyname.sh` from [**BBMap suite**][1]: You need to include the `/1` in the header in your list file (here I am using the `nam…
Comment: Limma returned only positive logFC values by melissachua90 ▴ 40
Yeah, I added the design matrix. `design <- model.matrix(~0+group)`. These are raw counts.
Comment: Masking before RNA-Seq Alignment and Gene Prediction in Plant Genomes by Ayish • 0
Thank you for reply. I have Illumina paired-end reads. Would it be fine if I use hard-masking for STAR and soft-masked genome for BRAKER2? …
Comment: Masking before RNA-Seq Alignment and Gene Prediction in Plant Genomes by Darked89 4.4k
Soft masking the genome (unless something changed) not make any difference for STAR. Depending on how your RNA-Seq is done (Illumina? paire…
Answer: How to handle NaN in emmax Kinship matrix? by Thu • 0
Hi! Thanks for sharing your solution! It works! :)
Comment: Gene prediction software by Darked89 4.4k
Looks like there are five Clarias genomes: * https://www.ncbi.nlm.nih.gov/genome/?term=txid13012[Organism:exp] The most complete seems t…
Comment: Alignment of case vs. control from different origin by sativus ▴ 10
Again, thank you so much for these very clearly explained summaries. After reading some articles on the matter, i feel i have a much better…
Answer: Extract sequences from a fastq file by a list of IDs by colindaven 4.9k
Some people I know have used filter-fastq successfully: https://github.com/Floor-Lab/filter-fastq
Comment: Extract sequences from a fastq file by a list of IDs by Pierre Lindenbaum 154k
> but none of them work for me https://meta.stackexchange.com/questions/147616/
Comment: Extract sequences from a fastq file by a list of IDs by Pierre Lindenbaum 154k
https://meta.stackexchange.com/questions/147616/
Comment: Extract sequences from a fastq file by a list of IDs by mhpakdel96 • 0
I have tried this one before but the output file is empty
Comment: Extract sequences from a fastq file by a list of IDs by mhpakdel96 • 0
I have tried all of them but none of them work for me
Traffic: 2107 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6