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Job: Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
intern
27 days ago by Shicheng Guo ★ 9.4k
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Job: Full Stack Web Developer - Cambridge, UK
JavaScript Python Visualisation
written 8.4 years ago by ▴ 400
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Job: Bioinformatics/Data Science postdoc position in Aarhus, Denmark
data-science genomics postdoc
updated 27 days ago by 43k • written 7 weeks ago by • 0
0
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209
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Job: Bioinformatics PhD position in Aarhus, Denmark
PhD Genomics Cancer
updated 21 days ago by 43k • written 23 days ago by • 0
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294
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Job: PhD in bioinformatics / computational biology
NGS Omics Evolution Aging
24 days ago by Arne.Sahm • 0
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264
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Job: Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
Kubernetes DevOps executor AWS Snakemake
updated 15 days ago by 54k • written 15 days ago by ▴ 100
0
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145
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Job: Ensembl Plants Senior Bioinformatician
ebi embl genomics ensembl
10 days ago by Ben_Ensembl ★ 2.4k
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2.0k
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Job: Bioinformatics Research Postdoc
RNA-Seq genome
updated 21 days ago by 43k • written 8.2 years ago by • 0
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Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
NGS Genomics Post-doc R-loops
updated 4 hours ago by 43k • written 11 hours ago by • 0
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209
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Job: Ensembl Outreach Project Leader
ebi embl genomics ensembl
10 days ago by Ben_Ensembl ★ 2.4k
1
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204
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Job: CTO/founding engineer role at Voyant Bio
engineer
7 days ago by Assaf ▴ 10
11 results • Page 1 of 1
Recent Votes
Comment: Converting CRAM to FastQ
Answer: Download eQTL data of one specific gene for all tissues from GTEx
A: Tools To Calculate Average Coverage For A Bam File?
A: read depth using samtools
How to download raw sequence data from GEO/SRA
Tools To Calculate Average Coverage For A Bam File?
Recommend Your Favorite Bioinformatics Books
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Popular Question to yvonnehhe • 0
Popular Question to curious ▴ 750
Scholar to jared.andrews07 ★ 16k
Popular Question to hafiz.talhamalik ▴ 350
Popular Question to Hayler Edu ▴ 40
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Popular Question to g.persic1991 • 0
Recent Replies
Answer: VG : No reference-sense paths available in the graph; falling back to generic pa by anovak ▴ 120
If your GFA has paths in it that are P lines with names that don't include a sample name, contig name, and separators, then those are what …
Comment: Extract gRNA sequence using cutadapt by GenoMax 142k
> if you look at a fastq file you should be able to tell for every read definitely, if it has a perfect match for a guide in it and what gu…
Answer: DiffBind: no peaks in DBA by jared.andrews07 ★ 16k
Because `dba.analyze` is not meant to be run directly on a peaks file. Have you read the documentation? In addition, a ChIP-seq experiment…
Comment: Converting CRAM to FastQ by Maverick ▴ 10
Thank you so much! Will look it up right away.
Comment: Extract gRNA sequence using cutadapt by gernophil ▴ 80
> I don't think every guide is supposed to show up in these experiments as far as I have seen. You will get some guides with 0 counts as yo…
Comment: Converting CRAM to FastQ by GenoMax 142k
Use `samtools view ` for this conversion. See discussion in https://www.biostars.org/p/9592860/ Specifically @jkbonfield's comment here --…
Comment: How to access TCGA samples that were treated with a specific drug? by GenoMax 142k
No that was only from Breast cancer. You could try selecting all data and see if you are able to see all treatments in the set. No idea a…
Comment: Extract gRNA sequence using cutadapt by GenoMax 142k
I don't think every guide is supposed to show up in these experiments as far as I have seen. You will get some guides with 0 counts as you …
Comment: Extract gRNA sequence using cutadapt by gernophil ▴ 80
> Can you try lowering the k to k=9? Wouldn't that mess with the results since all my kmers are 20bp? > You don't have any duplicate sequ…
Comment: Provean help by Mensur Dlakic ★ 27k
> Else, I will happy to send over the data and kindly perform the analysis for me. This website is meant to provide advice, not service. I…
Comment: How to access TCGA samples that were treated with a specific drug? by Qroid ▴ 40
Thank you! Naive question, but does that list include all treatments in TCGA? I.e. is there anything missing from there, or that's it? Als…
Comment: Base Quality Score Recalibration with different reference genome by dtnondorf • 0
Interesting! Thank you for such a quick response!
Comment: GATK genomicsDBimport intervals for WGS by Sd • 0
I also have similar question. I sliced the genomic bed file with 50kb windows and 1kb padding into ~700 bed files; each bed file contains 9…
Comment: Base Quality Score Recalibration with different reference genome by GenoMax 142k
See answer here: https://www.biostars.org/p/9494503/#9494619 Heng Li said: https://twitter.com/lh3lh3/status/1410375781340135424 <!-- th…
Comment: DiffBind: no peaks in DBA by yvonneh ▴ 10
Ok fixed!
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