Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
17 results • Page
1 of 1
Sort: Votes
Rank
Views
Votes
Replies
13
votes
10
replies
693
views
6 follow
NGS forensics: how to know if data is fabricated
fastq
STAR
NGS
Illumina
updated 28 minutes ago by
Mensur Dlakic
★ 27k • written 1 day ago by
noodle
▴ 530
2
votes
5
replies
343
views
Fetch table from clinvar database according to a list of rsid
python
clinvar
perl
3 hours ago by
ashaneev07
▴ 20
2
votes
6
replies
1.1k
views
Differential Expression using Isoseq-supplemented reference transcriptome
RNA-Seq
Salmon
Isoseq
updated 13 hours ago by
Ram
43k • written 8 months ago by
Calum
▴ 10
2
votes
3
replies
2.5k
views
When to use .vcf or .gvcf files from GATK HaplotypeCaller?
indel
gatk
calling
snp
variant
updated 19 hours ago by
zihanss
• 0 • written 23 months ago by
Vitor1
▴ 120
1
vote
3
replies
196
views
How to assign cell types after integration in scRNA
scRNA-seq
updated 3 hours ago by
ATpoint
82k • written 1 day ago by
Francesco
▴ 10
1
vote
3
replies
305
views
Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:1.1.1.4, 1.1.1.-, 1.1.1.303)?
ontology
metagenomics
database
enzymes
genomics
updated 1 hour ago by
Mensur Dlakic
★ 27k • written 1 day ago by
O.rka
▴ 710
1
vote
3
replies
301
views
PCA plot
DESeq2
PCAplot
updated 2 hours ago by
LauferVA
4.2k • written 3 days ago by
Aaliya
▴ 10
1
vote
1
reply
176
views
ChIP-seq datasets: input samples omitted?
ChIP-seq
Normalization
NGS
updated 14 hours ago by
ATpoint
82k • written 2 days ago by
vanbelj
▴ 40
1
vote
7
replies
395
views
gvcf joint calling
WES
GATK
VCF
gVCF
12 hours ago by
zihanss
• 0
0
votes
0
replies
19
views
News:
Online course: Genome Annotation
GenomeAssembly
GenomeAnnoration
2 hours ago by
carlopecoraro2
★ 2.5k
0
votes
4
replies
100
views
What does it mean single base resolution in sequencing?
SNP
sequencing
updated 2 hours ago by
dsull
★ 5.9k • written 3 hours ago by
jinyu
▴ 10
0
votes
0
replies
18
views
PDB related issue
rcsb
pdb
1 hour ago by
Nafi
• 0
0
votes
12
replies
313
views
How many reads for WGS Sequencing?
WGS
Bacterial-Genomics
updated 56 minutes ago by
Mensur Dlakic
★ 27k • written 18 hours ago by
Ruqaiya
• 0
0
votes
1
reply
684
views
Can I run cellassign on samples independently if there is batch effect present?
RNA-Seq
R
cellassign
batch-effect
updated 10 hours ago by
Francesco
▴ 10 • written 3.3 years ago by
gt
▴ 30
0
votes
1
reply
82
views
Downloading full alignments from Pfam
pfam
updated 5 hours ago by
GenoMax
141k • written 10 hours ago by
bef1
• 0
0
votes
0
replies
56
views
adjusting for confounders in LMER in R
confounders
LMER
R
14 hours ago by
rene.j.erhardt
▴ 20
0
votes
9
replies
2.4k
views
6 follow
Cannot process all the reads in a fast5 file?
metagenome
nanopore
basecalling
fastq
updated 2 hours ago by
chujie
• 0 • written 8 months ago by
Gio
• 0
17 results • Page
1 of 1
Recent Votes
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
Answer: How to use limma to find differentially expressed genes in response to a continu
Batch effects : ComBat or removebatcheffects (limma package) ?
Recent Locations •
All
Finland,
1 minute ago
NYC,
3 minutes ago
Estonia,
6 minutes ago
United States,
8 minutes ago
United States,
8 minutes ago
Morocco,
9 minutes ago
USA,
10 minutes ago
Recent Awards •
All
Popular Question
to
carlopecoraro2
★ 2.5k
Popular Question
to
rj.rezwan
• 0
Popular Question
to
husensofteng
▴ 410
Popular Question
to
Raheleh
▴ 260
Popular Question
to
Aspire
▴ 300
Popular Question
to
rene.j.erhardt
▴ 20
Popular Question
to
yueli7
▴ 250
Recent Replies
Answer: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I downloaded the data in two files from the link you provided. With this command: megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
If you have Linux the assembly should work on your system, but 8 GB is generally not enough for assembling larger genomes.
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I think you might be getting stuck on less relevant parts of my exercise. The most important point was that nothing is wrong with the data.…
Comment: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
Great comprehensive explanation and overview of the technologies -- with regards to sequencing assays, the one thing I'd add is SNV identif…
Answer: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
I think that term means slightly different things in different contexts. For example, it's useful to profile mRNA modifications (e.g. m6a) …
Comment: Cannot process all the reads in a fast5 file?
by
chujie
• 0
Hi, I met the same problem, have you found the solution?
Answer: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
Hi @fe3e6f65 , In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
Comment: PCA plot
by
LauferVA
4.2k
Without more context, we cannot interpret this PCA plot. There are many possibilities. In addition, this question is basic enough that it w…
Comment: NGS forensics: how to know if data is fabricated
by
Jeremy Leipzig
22k
i have the name ready: out**liar**
Comment: What does it mean single base resolution in sequencing?
by
GenoMax
141k
Sequencing by hybridization (https://en.wikipedia.org/wiki/Sequencing_by_hybridization ) is likely not giving you single base resolution. B…
Comment: Fetch table from clinvar database according to a list of rsid
by
ashaneev07
▴ 20
Hii... i have updated the script in python..But, still getting no data found. Actually the data is there, i have print the parsed html file…
Comment: How to assign cell types after integration in scRNA
by
ATpoint
82k
https://bioconductor.org/books/release/OSCA.multisample/using-corrected-values.html
Comment: Downloading full alignments from Pfam
by
GenoMax
141k
Not as convenient but the entire set of full alignments can be downloaded here: https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pf…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
> What does clipped Fastq mean? Probably means that NCBI has already scanned and trimmed adapter sequencers. > both forward and revers…
Traffic: 1795 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6