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24 results • Page
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Sort: Rank
Rank
Views
Votes
Replies
0
votes
3
replies
84
views
ceres score in crispr screen
ceres
crispr
ngs
just now by
edus_bioinfo
▴ 20
1
vote
2
replies
1.4k
views
Error while trying to install salmon
software error
assembly
sequence
genome
updated 9 hours ago by
Chris
▴ 10 • written 2.3 years ago by
koushik.vf09
▴ 30
0
votes
1
reply
137
views
finding error to run edgeR, error in ploting MDS and after that in model matrix also
DEGs
updated 10 hours ago by
Gordon Smyth
★ 5.4k • written 13 hours ago by
rupali
• 0
0
votes
0
replies
67
views
Issues Using DMRcate and rmSNPandCH
DMRcate
R
10 hours ago by
Indira
• 0
0
votes
0
replies
68
views
Statistical test on two phylogenetically remote groups
phylogeny
ANOVA
11 hours ago by
liorglic
★ 1.1k
0
votes
3
replies
158
views
samtools markdup in Rsamtools
remove
samtools
Rsamtools
duplicate
R
updated 12 hours ago by
joe
▴ 350 • written 14 hours ago by
Learner
• 0
0
votes
1
reply
102
views
Network analysis for two Factors
score
protein
network
chip-seq
analysis
updated 2 hours ago by
seidel
10k • written 15 hours ago by
Ankit
▴ 390
0
votes
0
replies
89
views
Sequence Homology locator
Sequence
Homology
Genome
finder
16 hours ago by
himalayan_yeti
• 0
0
votes
0
replies
80
views
How to find the most frequent alternative-splicing event from DEXSEQ data?
DESEQ
RNA-SEQ
DEXSEQ
16 hours ago by
STARDUST
• 0
1
vote
0
replies
91
views
How to use CAFE from Orthofinder Results
expansion
orthofinder
cafe
gene
16 hours ago by
ahmadjoyyia
▴ 10
2
votes
2
replies
195
views
To batch correct or analyse separately?
scRNA-seq
batch
correction
updated 15 hours ago by
predeus
★ 1.8k • written 1 day ago by
bompipi95
▴ 50
1
vote
2
replies
211
views
Issue with hmmcalibrate during tutorial.
hmmsearch
hmmbuild
hmmer
hmmcalibrate
16 hours ago by
apcreyes29
• 0
1
vote
0
replies
145
views
SNP calling
SNPcalling
19 hours ago by
abozorgmehr1985
▴ 10
0
votes
0
replies
127
views
News:
Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Bioinformatics
Programming
Python
21 hours ago by
carlopecoraro2
★ 2.2k
0
votes
3
replies
220
views
PLINK2 selecting variants based on INFO score
plink2
updated 8 hours ago by
chrchang523
9.9k • written 1 day ago by
m.c.roozen
• 0
3
votes
4
replies
348
views
High downstream gene expression
downstream
High
Gene
expression
21 hours ago by
yoser4
▴ 10
3
votes
4
replies
372
views
Annotating ENS codes to gene name
expression
RNA-seq
DEseq2
updated 22 hours ago by
Apex92
▴ 260 • written 1 day ago by
yoosefyud
▴ 40
0
votes
5
replies
399
views
HTSeq error processing GFF file
HTSeq
GFF
GTF
updated 23 hours ago by
barslmn
★ 1.2k • written 2 days ago by
ibq.enriquepola
• 0
0
votes
0
replies
123
views
bwa: reads aligned concordantly exactly 1 time
bowtie2
samtools
hisat2
alignment
bwa
17 hours ago by
poecile.pal
▴ 40
1
vote
4
replies
432
views
phylogeny
diversity
phylogenetic
updated 16 hours ago by
炫
• 0 • written 4 months ago by
1509636876
• 0
1
vote
10
replies
7.3k
views
How to change fastq reads header for running Trinity on them?
trinity
RNA-Seq
ngs
Assembly
updated 16 hours ago by
Ram
37k • written 7.7 years ago by
seta
★ 1.7k
4
votes
8
replies
2.1k
views
How to get gene sequences from gene IDs from different organisms?
ensembl
sequence
updated 16 hours ago by
Ram
37k • written 7.7 years ago by
Ali R. Vahdati
▴ 190
1
vote
10
replies
2.1k
views
Compare one of the columns of two seperate files and write the raw of the second file next to first file if match.
next-gen
code
updated 16 hours ago by
Ram
37k • written 7.8 years ago by
emre
• 0
5
votes
7
replies
2.0k
views
Transcriptome reconstruction from both short reads and long sequences
SAM
BAM
Mapping
updated 16 hours ago by
Ram
37k • written 7.8 years ago by
Prakki Rama
★ 2.6k
24 results • Page
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Recent Votes
Deseq2 with one factor and multiple levels
Answer: Error while trying to install salmon
Answer: Forcing Installation Of DMRcate
Gene Expression Omnibus Data Mining (IA): Quick and easy download of GEO data
SNP calling
Comment: Annotating ENS codes to gene name
1000 genomes project reference panel - GRCh38
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★ 2.2k
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alslonik
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edus_bioinfo
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tarek.mohamed
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Recent Replies
Comment: ceres score in crispr screen
by
edus_bioinfo
▴ 20
:) technical support. my run is giving Error: Encountered internal Bowtie 2 exception (#1) Command: /Users/sudeeris/Downloads/bowtie2-2.5…
Comment: Network analysis for two Factors
by
seidel
10k
Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language? [1]: …
Comment: ceres score in crispr screen
by
seidel
10k
Are you looking for moral support or technical support? Have you tried using it with an older version of R and bioconductor? (i.e. circa 20…
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon
by
Chris
▴ 10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
by
Gordon Smyth
★ 5.4k
First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools
by
joe
▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools
by
Pierre Lindenbaum
152k
> But other solutions are also fine: bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools
by
ATpoint
68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately?
by
predeus
★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny
by
炫
• 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny
by
炫
• 0
您好,我的问题和您的一模一样,请问您这个问题最终解决了吗
Comment: Issue with hmmcalibrate during tutorial.
by
apcreyes29
• 0
If that's the case then I'll just proceed then. Thank you!
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