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22 results • Page
1 of 1
Sort: Votes
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Views
Votes
Replies
3
votes
3
replies
278
views
Segmentation fault Biopython pairwise alignment
biopython
alignment
1 hour ago by
antoine.fauchois92
▴ 20
1
vote
3
replies
203
views
INSTALLING DEseq2 via conda
seq
conda
RNA
Dseq2
1 hour ago by
Fizzah
▴ 20
1
vote
7
replies
5.6k
views
Human reference files in HG38 GATK resource bundle
VCF
updated 1 hour ago by
dare_devil
★ 3.1k • written 5.3 years ago by
win
▴ 940
0
votes
6
replies
310
views
Demultiplexing bam file
demultiplexing
bam_file
Iontorrent
20 hours ago by
hasani.iut6
▴ 60
0
votes
0
replies
82
views
BCR/TCR analysis using target capture sequencing data
capture
ngs
TCR
BCR
19 hours ago by
J.F.Jiang
▴ 900
0
votes
2
replies
147
views
Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
Mapping
Variant-calling
masking
updated 19 hours ago by
Ram
39k • written 20 hours ago by
Joel Wallenius
▴ 120
0
votes
0
replies
76
views
References selected by ExomeDepth CNV
CNV
ExomeDepth
updated 13 hours ago by
GenoMax
129k • written 16 hours ago by
keiko.asakura
• 0
0
votes
0
replies
67
views
Merging multiple PLINK files
plink
merging
13 hours ago by
Nejla
• 0
0
votes
0
replies
50
views
Converting RefSeq protein accession IDs into entreZ IDs
RNA-SEQ
8 hours ago by
Pegasus
▴ 90
0
votes
0
replies
40
views
How to retrieve non-redundant restriction enzymes database from Rebase?
Rebase
Databases
enzymes
Restriction
5 hours ago by
Mahmoud Reda
▴ 10
0
votes
0
replies
37
views
Michigan Imputation Server - Local docker image
genotype
WGS
imputation
4 hours ago by
batch_effect
• 0
0
votes
0
replies
38
views
How to calculate SARS-2'S evolutionary rate
evolutionary
rate
4 hours ago by
chengc2016zzu
• 0
0
votes
1
reply
104
views
weird behaviour on bedtools
bedtools
RNA-Seq
updated 4 hours ago by
MatthewP
★ 1.2k • written 20 hours ago by
barrypraveen
▴ 110
0
votes
0
replies
16
views
Make a BedGraph file
BedGraph
RepeatMasker
BED
1 hour ago by
kirillkirilenko
▴ 10
0
votes
1
reply
22
views
how to use Hemtools bed2vcf?
vcf
linux
conversion
bed
updated 1 hour ago by
ATpoint
72k • written 1 hour ago by
MobiusT
▴ 10
0
votes
5
replies
666
views
vcftools --weir-fst-pop returns -nan
fst
vcftools
updated 41 minutes ago by
mingxi
• 0 • written 5 months ago by
elizabeth
• 0
0
votes
0
replies
10
views
how to create correlation matrix R
correlation
R
pearson
matrix
36 minutes ago by
satva72
• 0
0
votes
0
replies
9
views
Bulk RNA sequencing time course pathway analysis progression visualization
timecourse
rnaseq
time
pathway
16 minutes ago by
Fred
• 0
0
votes
1
reply
110
views
Query qbout single cell sequencing
Files
fastq
Data
ScRNA
updated 21 hours ago by
GenoMax
129k • written 1 day ago by
abbas.waseem.gcu
• 0
0
votes
1
reply
114
views
How to introduce normalized and scaled seurat data into monocle 3?
Monocle
scRNA-seq
Seurat
updated 10 minutes ago by
fracarb8
▴ 950 • written 1 day ago by
Sun
• 0
0
votes
1
reply
116
views
ABySS Process Killed
ABySS
genome
assembly
updated 21 hours ago by
GenoMax
129k • written 1 day ago by
asarcillo
• 0
0
votes
2
replies
131
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
nanostring
gsea
r
20 hours ago by
pg45863
• 0
22 results • Page
1 of 1
Recent Votes
How to interpret Per sequence GC content module in FastQC for RNA-seq data?
How to interpret Per sequence GC content module in FastQC for RNA-seq data?
Answer: Different results between clusterProfiler and Enrichr
C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
A: Extract SNPs from VCFfile located in genes based on GFF file information
Discrimination Between Germline And Somatic Mutations In Tumor Without The Availability Of The Normal Paired Sample
A: Filtering of VCF, INFO DP or FORMAT DP
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Recent Replies
Comment: Different results between clusterProfiler and Enrichr
by
abbas89
▴ 10
That's why I said "even when not including backrground genes" in clusterProfiler I still get completely different restults.
Comment: How to introduce normalized and scaled seurat data into monocle 3?
by
fracarb8
▴ 950
Have a look at `as.cell_data_set` from `SeuratWrappers`
Answer: I don't want to believe the Interproscan DB estimated download time.
by
colindaven
4.8k
It might be your university proxy server. You can try with `wget --no-proxy https://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.62-94.…
Answer: Graphing Average Expression of Group of Genes
by
Shred
★ 1.2k
Boxplot is designed to visualize the range of values towards the median. The average value for each group will be inflated by outlier sampl…
Comment: vcftools --weir-fst-pop returns -nan
by
mingxi
• 0
Have you try to use 4 samples in each group ? it seems that fst needs at least 3 or 4 samples in each pop to get a right result
Answer: CORUM server not working?
by
Elisabeth Gasteiger
★ 2.2k
At UniProt, we have cross-references to CORUM and noticed that the database was not accessible. The providers told us that they had been vi…
Comment: how to use Hemtools bed2vcf?
by
ATpoint
72k
Please go through your previous questions, follow up where necessary, upvote if appropriate and accept answers that solved the issue (the c…
Comment: how to use nohup with parallel
by
gavin
• 0
Thanks for your valuable suggestion!
Comment: how to use nohup with parallel
by
gavin
• 0
Thanks, according to your suggestion, the following code work: disown -h -a
Comment: INSTALLING DEseq2 via conda
by
Fizzah
▴ 20
@rpolicastro I have done that but the issue is still there. please guide how can I solve this issue
Comment: Human reference files in HG38 GATK resource bundle
by
dare_devil
★ 3.1k
Run `samtools faidx Homo_sapiens_assembly38.fasta`
Comment: Segmentation fault Biopython pairwise alignment
by
antoine.fauchois92
▴ 20
Indeed, my files are multiline fasta. I tried to read them with readlines method and then remove the "\n". However I got the same error. I …
Answer: 1000G reference panel for LD
by
en_keser
• 0
Thank you so much! Just sent you an email.
Comment: weird behaviour on bedtools
by
MatthewP
★ 1.2k
Maybe IGV not displaying all reads? (downsample display).
Answer: how to use nohup with parallel
by
MatthewP
★ 1.2k
After command ```bash cat list.txt | parallel --jobs 10 fastq-dump {} --split-3 --gzip -O ./ > log.txt 2>&1 & ``` you can use `jobs -…
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