Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
181
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
10 days ago by
enferdeflame
• 0
1
vote
1
reply
421
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 8 days ago by
Gordon Smyth
★ 7.0k • written 10 days ago by
Chris
▴ 260
0
votes
1
reply
403
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 10 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
0
votes
0
replies
161
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 10 days ago by
Ram
43k • written 10 days ago by
bioinfo223
▴ 10
0
votes
0
replies
179
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
10 days ago by
P.
• 0
0
votes
0
replies
170
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
10 days ago by
ekirsch
• 0
1
vote
1
reply
411
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
9 days ago by
renan.igor
• 0
0
votes
0
replies
182
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
11 days ago by
synat.keam
▴ 100
0
votes
1
reply
273
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 11 days ago by
GenoMax
141k • written 11 days ago by
ycts
• 0
0
votes
4
replies
588
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
9 days ago by
Kai Xin
• 0
1
vote
1
reply
227
views
Retrieve a % coverage for each transcript
RNA-seq
updated 11 days ago by
Ram
43k • written 11 days ago by
jammydodger123456
▴ 40
0
votes
2
replies
377
views
How can I solve this error?
metal
11 days ago by
22211020193
• 0
0
votes
0
replies
169
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 11 days ago by
GenoMax
141k • written 11 days ago by
srimmer
• 0
1
vote
2
replies
280
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 11 days ago by
Ram
43k • written 11 days ago by
aniigodwinn
• 0
0
votes
0
replies
357
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
11 days ago by
Ronin
• 0
2
votes
7
replies
833
views
Removing duplicates
duplicates
ONT
minimap2
updated 10 days ago by
noodle
▴ 540 • written 11 days ago by
quentinperriere
• 0
0
votes
1
reply
201
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 11 days ago by
DKA
▴ 40 • written 11 days ago by
james.melhorn
• 0
0
votes
1
reply
191
views
Freyja plot error
Freyja
updated 11 days ago by
Ram
43k • written 11 days ago by
Adyasha
• 0
0
votes
0
replies
160
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
11 days ago by
chemokine-1
▴ 10
0
votes
4
replies
512
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
10 days ago by
feather-W
• 0
0
votes
2
replies
229
views
Bedmethyl file format
bedmethyl
methylation
updated 11 days ago by
GenoMax
141k • written 11 days ago by
njornet
▴ 20
0
votes
0
replies
171
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
11 days ago by
Ali
• 0
2
votes
4
replies
324
views
SnpEff annotates coding duplication as intronic?
snpeff
11 days ago by
kirill.zaslavsky
• 0
0
votes
2
replies
255
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
11 days ago by
mropri
▴ 150
0
votes
0
replies
146
views
Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownames
rownames
RNA-Seq
WGCNA
unique
12 days ago by
shasabhi1
• 0
0
votes
0
replies
137
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
12 days ago by
Nishat
• 0
0
votes
0
replies
165
views
what exactly is a k-mer table (remora)?
remora
basecall
12 days ago by
anne
• 0
1
vote
1
reply
183
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 12 days ago by
dsull
★ 5.9k • written 12 days ago by
niruf
• 0
0
votes
0
replies
145
views
GWAS Phenotypes
GWAS
12 days ago by
solomoncharles77
▴ 90
0
votes
2
replies
322
views
GSEA analysis in R
GSEA
R
Arabidopsis
10 days ago by
Sudip
• 0
0
votes
0
replies
124
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
12 days ago by
QX
• 0
2
votes
5
replies
472
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
11 days ago by
Bikram Kumar
• 0
0
votes
2
replies
263
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 12 days ago by
Ram
43k • written 13 days ago by
David
• 0
1
vote
2
replies
276
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
12 days ago by
bioinfo
▴ 150
0
votes
1
reply
198
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 13 days ago by
bk11
★ 2.4k • written 13 days ago by
sinhas
• 0
0
votes
1
reply
213
views
merging Seurat objects after SCT
Seurat
SCT
updated 13 days ago by
Ram
43k • written 13 days ago by
michelle.swarovski
• 0
0
votes
1
reply
216
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 13 days ago by
GenoMax
141k • written 13 days ago by
haiying.kong
▴ 360
0
votes
2
replies
270
views
RNAseq 1 control 2 different treatment
RNA-seq
12 days ago by
matteo.levorato
• 0
1
vote
0
replies
146
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 13 days ago by
Ram
43k • written 13 days ago by
Oscar
▴ 10
0
votes
0
replies
156
views
How should I make kallisto indexes?
kallisto
updated 13 days ago by
GenoMax
141k • written 13 days ago by
bioinfo
▴ 150
2
votes
0
replies
209
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
13 days ago by
Alexander
▴ 220
1
vote
1
reply
186
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 13 days ago by
GenoMax
141k • written 13 days ago by
eesiribloom
▴ 80
0
votes
0
replies
141
views
Automated internal stop codon checker
ORF
stopcodon
internal
virus
13 days ago by
Balazs Horvath
▴ 10
0
votes
0
replies
145
views
Repeat expansion identification tools for long-read data
fragilex
repeatexpansion
long-read
fmr1
13 days ago by
adarsh_pp
▴ 40
0
votes
0
replies
155
views
FreeBayes detection capacity
reads
freebayes
long
13 days ago by
quentinperriere
• 0
0
votes
2
replies
256
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
11 days ago by
DKA
▴ 40
0
votes
0
replies
166
views
Plotting heatmap of genes in each samples scRNA in Seurat
scRNA
heatmap
14 days ago by
Hien
• 0
0
votes
2
replies
297
views
Merging Outputs from plink --assoc and --hardy to Produce Table
PLINK
PANDAS
R
12 days ago by
Koketso
• 0
0
votes
0
replies
194
views
Novel cyclic peptide structure prediction
protein
structure-prediction
alphafold
peptide
updated 14 days ago by
Ram
43k • written 14 days ago by
menyawino
• 0
1
vote
3
replies
361
views
Ensembl gene id conversion
biomart
ensembl
updated 12 days ago by
ATpoint
82k • written 14 days ago by
naveedhasan2000
• 0
1,000 results • Page
3 of 20
Recent Votes
Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
A: Hard time trying to calculate Allele Frequency and DP from Platypus
Answer: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
Recent Locations •
All
Palau,
1 minute ago
United States,
6 minutes ago
Perth, Australia,
11 minutes ago
United States,
11 minutes ago
United States,
16 minutes ago
Indonesia,
19 minutes ago
United States,
22 minutes ago
Recent Awards •
All
Teacher
to
Jeremy Leipzig
22k
Popular Question
to
AshleeThomson
▴ 80
Popular Question
to
michael.flower.14
▴ 180
Popular Question
to
Nitin Narwade
★ 1.6k
Popular Question
to
carlopecoraro2
★ 2.5k
Popular Question
to
rj.rezwan
• 0
Popular Question
to
husensofteng
▴ 410
Recent Replies
Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.4k
i've been in our org trying to push such a detector, our use-case is much more limited: I want to make simulated eDNA libraries as real as …
Answer: Differential Expression using Isoseq-supplemented reference transcriptome
by
Gordon Smyth
★ 7.0k
> What is the best method to test for differential abundance at the isoform level? Salmon returns TPM values instead of the counts which Li…
Answer: Finding batch and outlayers
by
Tigran
• 0
![enter image description here][1] [1]: /media/images/aa60b9ef-b08c-4093-9f0d-fb656a5c
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Can you post an IGV screenshot of what this looks like?
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Yeah some of the Illumina machines pre-trim adapters (not sure if this is still the standard). I've also definitely also seen quality-trimm…
Comment: PDB related issue
by
noodle
▴ 540
You can typically find much more useful info in the cif file, for example what you've found is called '_atom_site.pdbx_PDB_ins_code ' and d…
Comment: PDB related issue
by
Mensur Dlakic
★ 27k
The best way to find out is to read the original paper. My guess is that the residue has been crystallized in alternative conformations, wh…
Answer: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I downloaded the data in two files from the link you provided. With this command: megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
If you have Linux the assembly should work on your system, but 8 GB is generally not enough for assembling larger genomes.
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I think you might be getting stuck on less relevant parts of my exercise. The most important point was that nothing is wrong with the data.…
Comment: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
Great comprehensive explanation and overview of the technologies -- with regards to sequencing assays, the one thing I'd add is SNV identif…
Answer: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
I think that term means slightly different things in different contexts. For example, it's useful to profile mRNA modifications (e.g. m6a) …
Comment: Cannot process all the reads in a fast5 file?
by
chujie
• 0
Hi, I met the same problem, have you found the solution?
Answer: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
Hi @fe3e6f65 , In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
Traffic: 2859 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6