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37 results • Page
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4
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567
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Herald:
The Biostar Herald for Monday, October 09, 2023
herald
written 7 months ago by
Biostar
2.7k
1
vote
1
reply
242
views
Herald:
The Biostar Herald for Tuesday, April 23, 2024
herald
updated 20 days ago by
Pierre Lindenbaum
161k • written 20 days ago by
Biostar
2.7k
2
votes
1
reply
461
views
Herald:
The Biostar Herald for Tuesday, December 19, 2023
herald
updated 4 months ago by
cmdcolin
★ 3.8k • written 4 months ago by
Biostar
2.7k
4
votes
1
reply
760
views
Herald:
The Biostar Herald for Monday, August 28, 2023
herald
updated 8 months ago by
Jesse
▴ 770 • written 8 months ago by
Biostar
2.7k
1
vote
0
replies
244
views
Herald:
The Biostar Herald for Tuesday, February 20, 2024
herald
11 weeks ago by
Biostar
2.7k
1
vote
0
replies
844
views
Herald:
The Biostar Herald for Tuesday, May 23, 2023
herald
11 months ago by
Biostar
2.7k
6
votes
0
replies
218
views
Herald:
The Biostar Herald for Monday, April 15, 2024
herald
28 days ago by
Biostar
2.7k
1
vote
0
replies
297
views
Herald:
The Biostar Herald for Monday, January 15, 2024
herald
3 months ago by
Biostar
2.7k
3
votes
0
replies
510
views
Herald:
The Biostar Herald for Tuesday, September 26, 2023
herald
7 months ago by
Biostar
2.7k
2
votes
0
replies
155
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
7 days ago by
Biostar
2.7k
2
votes
0
replies
271
views
Herald:
The Biostar Herald for Monday, February 12, 2024
herald
3 months ago by
Biostar
2.7k
3
votes
0
replies
308
views
Herald:
The Biostar Herald for Monday, January 22, 2024
herald
3 months ago by
Biostar
2.7k
4
votes
0
replies
504
views
Herald:
The Biostar Herald for Wednesday, September 06, 2023
herald
8 months ago by
Biostar
2.7k
4
votes
0
replies
556
views
Herald:
The Biostar Herald for Wednesday, September 20, 2023
herald
7 months ago by
Biostar
2.7k
2
votes
0
replies
1.1k
views
Herald:
The Biostar Herald for Thursday, June 15, 2023
herald
11 months ago by
Biostar
2.7k
1
vote
0
replies
200
views
Herald:
The Biostar Herald for Wednesday, April 03, 2024
herald
5 weeks ago by
Biostar
2.7k
3
votes
0
replies
458
views
Herald:
The Biostar Herald for Monday, October 16, 2023
herald
7 months ago by
Biostar
2.7k
3
votes
0
replies
384
views
Herald:
The Biostar Herald for Monday, November 27, 2023
herald
5 months ago by
Biostar
2.7k
3
votes
0
replies
228
views
Herald:
The Biostar Herald for Monday, March 11, 2024
herald
9 weeks ago by
Biostar
2.7k
1
vote
0
replies
292
views
Herald:
The Biostar Herald for Wednesday, January 31, 2024
herald
3 months ago by
Biostar
2.7k
4
votes
0
replies
149
views
Herald:
The Biostar Herald for Monday, April 29, 2024
herald
14 days ago by
Biostar
2.7k
3
votes
0
replies
185
views
Herald:
The Biostar Herald for Tuesday, April 09, 2024
herald
4 weeks ago by
Biostar
2.7k
1
vote
0
replies
806
views
Herald:
The Biostar Herald for Wednesday, August 02, 2023
herald
9 months ago by
Biostar
2.7k
2
votes
0
replies
335
views
Herald:
The Biostar Herald for Monday, January 08, 2024
herald
4 months ago by
Biostar
2.7k
4
votes
0
replies
311
views
Herald:
The Biostar Herald for Monday, February 26, 2024
herald
11 weeks ago by
Biostar
2.7k
4
votes
0
replies
373
views
Herald:
The Biostar Herald for Monday, December 11, 2023
herald
5 months ago by
Biostar
2.7k
3
votes
0
replies
406
views
Herald:
The Biostar Herald for Monday, November 13, 2023
herald
6 months ago by
Biostar
2.7k
0
votes
0
replies
50
views
Herald:
The Biostar Herald for Monday, May 13, 2024
herald
4 hours ago by
Biostar
2.7k
2
votes
0
replies
452
views
Herald:
The Biostar Herald for Monday, October 30, 2023
herald
6 months ago by
Biostar
2.7k
3
votes
0
replies
224
views
Herald:
The Biostar Herald for Monday, March 25, 2024
herald
7 weeks ago by
Biostar
2.7k
2
votes
0
replies
775
views
Herald:
The Biostar Herald for Monday, June 05, 2023
herald
11 months ago by
Biostar
2.7k
2
votes
0
replies
378
views
Herald:
The Biostar Herald for Monday, December 04, 2023
herald
5 months ago by
Biostar
2.7k
3
votes
0
replies
420
views
Herald:
The Biostar Herald for Monday, November 20, 2023
herald
5 months ago by
Biostar
2.7k
2
votes
0
replies
496
views
Herald:
The Biostar Herald for Monday, October 23, 2023
herald
6 months ago by
Biostar
2.7k
2
votes
0
replies
694
views
Herald:
The Biostar Herald for Wednesday, August 09, 2023
herald
9 months ago by
Biostar
2.7k
1
vote
0
replies
614
views
Herald:
The Biostar Herald for Thursday, August 24, 2023
herald
8 months ago by
Biostar
2.7k
4
votes
0
replies
435
views
Herald:
The Biostar Herald for Monday, November 06, 2023
herald
6 months ago by
Biostar
2.7k
37 results • Page
1 of 1
Recent Votes
Best way to query VCF for specific variants
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
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Scholar
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kalavattam
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dthorbur
★ 2.0k
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Recent Replies
Answer: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last plac
by
David Langenberger
11k
Two last seats have just become available. Apply now, if you want them.
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
GenoMax
142k
You always need to add the following option when you are using `-p` to count paired-end reads. --countReadPairs If specified, fragm…
Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
by
mropri
▴ 150
Hi swbarnes2, that was the problem, they were not numeric but as character columns. converted them and it fixed the error. Thank you for yo…
Answer: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
Prawesh
• 0
I figured out: Since featureCounts counts fragments and not reads, we have pair-end data that means **Assigned** value from the output w…
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
kalavattam
▴ 190
> My question is this: "mate reverse strand" (flag 16/0x10) or "read reverse strand" (flag 32/0x20) do not directly relate to the strandedn…
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by
bhumm
▴ 140
As you stated, your problem is likely division by 0. See this [Cross-Validated][1] post that seems to be very similar to your problem. In …
Comment: Duplicated sequence samtools
by
GenoMax
142k
Consider using SLURM job arrays if you want to use a `for` loop inside a single SLURM job: https://hpc.nmsu.edu/discovery/slurm/job-arrays/
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by
Pierre Lindenbaum
161k
the sequence c_000007023807_aloha2_low_cov is duplicated in the reference grep c_000007023807_aloha2_low_cov path/to/reference.fasta
Comment: imputation through beagle
by
analyst
▴ 50
Thank you so much dthorbur. Yes I am new to imputation analysis. I will follow your kind suggestions. Thanks again!
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by
lagartija
▴ 160
I don't know but another way of doing it would be to combine different datasets of different strains that you know are clonal. Then you kno…
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by
bk11
★ 2.4k
Please check out these posts https://www.biostars.org/p/367626/
Comment: Galaxy StringTie error
by
trkfs
• 0
will do, thank you
Answer: Splitting Seurat object by sample layers
by
bk11
★ 2.4k
You can do the following- Idents(SeuratObj) <- "orig.ident" control_set <- subset(SeuratObj, idents = c("counts.control","data.…
Comment: Galaxy StringTie error
by
GenoMax
142k
> I have sent a bug report to the Galaxy administrator If you have not done so please post this in Galaxy help forum for directed help: h…
Comment: 44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped
by
Thind amarinder
▴ 340
Wondering, if it was total RNAseq data? or ployA
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