2
votes
0
replies
710
views
2
votes
0
replies
633
views
2
votes
0
replies
625
views
2
votes
0
replies
644
views
2
votes
0
replies
732
views
2
votes
0
replies
646
views
2
votes
0
replies
164
views
2
votes
0
replies
275
views
2
votes
0
replies
1.1k
views
2
votes
1
reply
464
views
2
votes
0
replies
654
views
2
votes
0
replies
383
views
2
votes
0
replies
779
views
2
votes
0
replies
547
views
2
votes
0
replies
558
views
2
votes
0
replies
538
views
2
votes
0
replies
595
views
2
votes
0
replies
340
views
2
votes
0
replies
587
views
2
votes
0
replies
548
views
2
votes
0
replies
591
views
2
votes
1
reply
666
views
2
votes
1
reply
640
views
updated 17 months ago by
Istvan Albert
100k
•
written 17 months ago by
Biostar
2.8k
2
votes
1
reply
712
views
2
votes
0
replies
671
views
2
votes
0
replies
630
views
2
votes
0
replies
666
views
2
votes
1
reply
800
views
2
votes
0
replies
457
views
2
votes
0
replies
571
views
2
votes
0
replies
550
views
2
votes
0
replies
135
views
2
votes
2
replies
802
views
updated 2.0 years ago by
Istvan Albert
100k
•
written 2.0 years ago by
Biostar
2.8k
2
votes
0
replies
708
views
2
votes
0
replies
499
views
2
votes
0
replies
699
views
1
vote
0
replies
668
views
1
vote
0
replies
610
views
1
vote
0
replies
577
views
1
vote
0
replies
500
views
1
vote
0
replies
597
views
1
vote
0
replies
540
views
1
vote
0
replies
845
views
1
vote
0
replies
565
views
1
vote
1
reply
741
views
updated 2.4 years ago by
Jeremy Leipzig
22k
•
written 2.4 years ago by
Biostar
2.8k
1
vote
0
replies
585
views
1
vote
0
replies
572
views
1
vote
0
replies
613
views
1
vote
2
replies
882
views
updated 2.3 years ago by
Mensur Dlakic
★
27k
•
written 2.3 years ago by
Biostar
2.8k
1
vote
0
replies
718
views
Recent Votes
Recent Locations •
All
United States, 3 minutes ago
Turkey, 3 minutes ago
Canada, 4 minutes ago
United States, 5 minutes ago
Germany, 5 minutes ago
United States, 7 minutes ago
France, 8 minutes ago
Recent Awards •
All
Popular Question to
Chironex
▴
40
Scholar to
rpolicastro
13k
Popular Question to
Amr
▴
160
Popular Question to
asalimih
▴
60
Popular Question to
nd48
▴
20
Recent Replies
Answer: Calculate allelic frequency from VEP output vcf file
by
ramiro.barrantes
•
0
Found the answer here!!
https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md#somatic
Although this leads to a str…
Comment: Using VEP annotation output as the input for a second VEP annotation
by
Ram
43k
That's not a valid reason to delete the post. If that information was sensitive, posting it here was a mistake in the first place. I don't …
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
by
marco.barr
▴
120
Hi, regardless of how you generated the data whether with DESeq2 or other pipeline, your differential expression matrix can be used as inpu…
Comment: Filtering VCF files based on VAF giving incorrect results
by
Pierre Lindenbaum
161k
> Do you think my commands were correct?
I'm not familiar enough with this bcftools syntax.
but what if there is no AD, what if both…
Answer: How can you *consistently* download BioProject IDs from NCBI's BioSample databas
by
Ash
▴
10
I know this was asked several years ago, but finding this post helped me solve my own problem and in the process I solved this one too.
…
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
swbarnes2
14k
Would Parkinson's be expected to have an effect on blood cells? Neurons, sure, but blood cells?
Comment: Doubt about the process of annotation, detection, identification and classificat
by
MarcosCosta
•
0
Thank you very much, you've helped me a lot.
Could you suggest a book or article that offers a complete explanation of these processes?
Comment: Filtering VCF files based on VAF giving incorrect results
by
Arton
•
0
Thank you. I can't try a completely new tool but I will keep your command for future use. Do you think my commands were correct? For exampl…
Comment: Genotyping sites with N in reference genome
by
Zhenyu Zhang
★
1.2k
Whether N -> A/T/G/C represents a variant is heavily dependent on the tool itself, and I know most tools don't. Since you don't see it in y…
Comment: calculating genomic coverage/ base overlap in R
by
marco.barr
▴
120
The code seems correct at first glance... How did you generate the data in the Excel file? Have you checked the exon annotations? You could…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Did you remeber to unzip/untar the `nt` preformatted files that you downloaded?
Comment: Genotyping sites with N in reference genome
by
shpak.max
▴
50
Just to clarify, I have set additional sites in the reference genome to 'N', which means (based on your statement) that these will not be g…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Pierre Lindenbaum
161k
see https://www.biostars.org/p/9496674/
<!-- when i runed blastn(version 2.15) and nt database(latest version). I used aspera to download…
Answer: Genotyping sites with N in reference genome
by
Pierre Lindenbaum
161k
> Does UnifiedGenotyper skip/ignore sites where the reference genotype is N
yes. The variant is in YOUR data, not in the reference where '…
Traffic: 2635 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6