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10 results • Page
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Job:
Full Stack Web Developer - Cambridge, UK
JavaScript
Python
Visualisation
written 8.4 years ago by
Richard Smith
▴ 400
0
votes
0
replies
2.0k
views
Job:
Bioinformatics Research Postdoc
RNA-Seq
genome
updated 18 days ago by
Ram
43k • written 8.2 years ago by
ggrant543
• 0
2
votes
1
reply
621
views
Job:
Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
intern
23 days ago by
Shicheng Guo
★ 9.4k
0
votes
0
replies
277
views
Job:
PhD in bioinformatics / computational biology
NGS
Omics
Evolution
Aging
21 days ago by
Arne.Sahm
• 0
0
votes
0
replies
253
views
Job:
Bioinformatics/Data Science postdoc position in Aarhus, Denmark
data-science
genomics
postdoc
updated 23 days ago by
Ram
43k • written 6 weeks ago by
besen
• 0
0
votes
0
replies
249
views
Job:
Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
Kubernetes
DevOps
executor
AWS
Snakemake
updated 12 days ago by
Michael
54k • written 12 days ago by
jonrkarr
▴ 100
0
votes
0
replies
199
views
Job:
Ensembl Outreach Project Leader
ebi
embl
genomics
ensembl
7 days ago by
Ben_Ensembl
★ 2.4k
0
votes
0
replies
197
views
Job:
Bioinformatics PhD position in Aarhus, Denmark
PhD
Genomics
Cancer
updated 18 days ago by
Ram
43k • written 20 days ago by
besen
• 0
0
votes
0
replies
182
views
Job:
CTO/founding engineer role at Voyant Bio
engineer
3 days ago by
Assaf
• 0
0
votes
0
replies
134
views
Job:
Ensembl Plants Senior Bioinformatician
ebi
embl
genomics
ensembl
7 days ago by
Ben_Ensembl
★ 2.4k
10 results • Page
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Recent Votes
Answer: Mapping ortholog human and mouse transcript
C: Kallisto missing Bootstrap
Answer: Very low RNA splicing rate for pulmonary AT2 cells
Answer: what is the purpose of indexing the reference genome (Kallisto)
The Biostar Herald for Monday, April 29, 2024
The Biostar Herald for Monday, April 29, 2024
Comment: NGS forensics: how to know if data is fabricated
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e.r.zakiev
▴ 200
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Bine
▴ 60
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Deepak Tanwar
★ 4.2k
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Recent Replies
Comment: Software to separate reads from different individuals
by
njornet
▴ 20
No... the extracted sample is already a mix so no way to barcode
Comment: Very low RNA splicing rate for pulmonary AT2 cells
by
e.r.zakiev
▴ 200
For anyone it might be useful: a colleague of mine, who was not dumb to use the wrong annotation `gtf`, also observed an important issue of…
Answer: Very low RNA splicing rate for pulmonary AT2 cells
by
e.r.zakiev
▴ 200
Hello people sorry I am dumb the problem lied in the fact that I had mouse cells but my `.gtf` transcriptome file was for the human. Now wi…
Comment: Genbank File Format
by
GenoMax
141k
Can you indicate if you need to do this within CLC or can use an external solution (if someone provides it here). If you need to do this in…
Comment: Downsampling fastq file
by
Ram
43k
The file being PE should not matter. I'd recommend you open an issue on the seqtk github repo as this is starting to look like some sort of…
Comment: CWl and toil singularity image e.g busybox? Thank you
by
Ram
43k
Do the developers of toil mention biostars? Where do they direct their support requests to?
Comment: How should I make kallisto indexes?
by
dsull
★ 5.9k
As an additional note, all those ``--include-attribute`` stuff was basically to restrict the transcriptome to precisely the items that Cell…
Answer: How should I make kallisto indexes?
by
dsull
★ 5.9k
I recommend the ``kb ref`` method for two reasons: 1. The index created will yield more accurate mapping for datasets that have a substa…
Comment: Software to separate reads from different individuals
by
GenoMax
141k
Were these samples barcoded when they were run. If not then you won't be able to do much.
Comment: ScRNA data question
by
bk11
★ 2.4k
The approach you are using here is the old method. Seurat is updated to V5. Please try Seurat V5 integrative analysis described in the link…
Answer: How should I make kallisto indexes?
by
Bajaj
• 0
Hi, you can still use `kallisto index -i transcripts.index transcripts.fa` (extract the gz file) for making index files. I have tried it an…
Comment: How to update R on ubuntu
by
Bosberg
▴ 50
Thanks for the suggestion, but I get several lines of results (see below) and although there are directories called `"R"`, I can't find any…
Comment: High Malat-1 expression in single cell data
by
dsull
★ 5.9k
Malat1 is a lncRNA abundant in the nucleus. I guess if Malat1 is abundant and stable, makes sense it could be detect in high amounts in scR…
Comment: CWl and toil singularity image e.g busybox? Thank you
by
Fadi
• 0
Where can I ask this question? Apparently this the place where you can help for toil?
Comment: Limma Analysis Agilent Microarray Data (GPL1708)
by
hagl
▴ 10
Dear Gordon, excuse me for not being specific regarding your advice. What would be the best way if I wanted to add new annotations to the …
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