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510 results • Page 2 of 11
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News: Google Dataset Search
google
updated 7 days ago by 39k • written 4.7 years ago by 154k
1
vote
2
replies
1.5k
views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 1 day ago by 39k • written 4.1 years ago by ▴ 580
2
votes
2
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1.2k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 14 days ago by 39k • written 5.5 years ago by ★ 2.3k
2
votes
2
replies
2.4k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 15 days ago by 39k • written 5.6 years ago by ★ 2.3k
0
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2
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1.9k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 13 days ago by 39k • written 5.4 years ago by 9.9k
2
votes
2
replies
772
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 1 day ago by 39k • written 4.1 years ago by ★ 2.3k
3
votes
2
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1.0k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 8 days ago by 39k • written 5.0 years ago by ★ 3.0k
3
votes
2
replies
854
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 6 days ago by 39k • written 4.4 years ago by • 0
13
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2
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1.2k
views
News: Thank you Biostars!
meta
updated 1 day ago by 39k • written 4.1 years ago by ▴ 140
2
votes
2
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2.9k
views
News: Upcoming Hands-On NGS Data Analysis Workshops 2018
Mapping Workshop RNA-Seq Quality-Control DNA-Seq
updated 14 days ago by 39k • written 5.5 years ago by 9.9k
3
votes
2
replies
1.1k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 14 days ago by 39k • written 5.6 years ago by 26k
0
votes
1
reply
1.4k
views
News: Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium NGS
updated 15 days ago by 39k • written 5.6 years ago by 5.7k
1
vote
1
reply
1.6k
views
News: Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners training
updated 14 days ago by 39k • written 5.6 years ago by ▴ 130
4
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1
reply
1.6k
views
News: scRNA-seq data analysis Workshop in Berlin
RNA-Seq next-gen
updated 6 days ago by 39k • written 4.5 years ago by ★ 2.3k
0
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1
reply
1.2k
views
News: Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA transcriptome-analysis RNA-Seq Strand-NGS
updated 16 days ago by 39k • written 5.9 years ago by ▴ 70
2
votes
1
reply
1.4k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 2 days ago by 39k • written 4.2 years ago by 9.9k
1
vote
1
reply
1.5k
views
News: 2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq Workshop NGS RNA-Seq
updated 10 days ago by 39k • written 5.2 years ago by 9.9k
3
votes
1
reply
810
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 5 days ago by 39k • written 4.3 years ago by ▴ 60
0
votes
1
reply
1.4k
views
News: A Personalized, Precise Approach to Fighting Cancer
biotech cancer sequencing ChIP-Seq RNA-Seq
updated 19 days ago by 39k • written 5.9 years ago by ▴ 70
0
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1
reply
443
views
News: Getting started with R
R
updated 2 days ago by 39k • written 4.2 years ago by ★ 2.3k
2
votes
1
reply
755
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 5 days ago by 39k • written 4.3 years ago by ★ 2.3k
3
votes
1
reply
686
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 21 hours ago by 39k • written 4.0 years ago by ▴ 150
1
vote
1
reply
1.8k
views
News: Bioinformatics Contest 2017. Results
contest
updated 20 days ago by 39k • written 6.2 years ago by ▴ 70
5
votes
1
reply
1.3k
views
News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 8 days ago by 39k • written 5.0 years ago by ★ 2.3k
2
votes
1
reply
957
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 7 days ago by 39k • written 4.7 years ago by ▴ 150
6
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1
reply
2.6k
views
News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 1 day ago by 39k • written 4.1 years ago by 154k
0
votes
1
reply
669
views
News: Advanced R Programming Course
R
updated 9 days ago by 39k • written 5.1 years ago by ★ 2.3k
3
votes
1
reply
1.2k
views
News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 22 days ago by 39k • written 6.2 years ago by 23k
3
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1
reply
1.4k
views
News: Bioconductor 2017 Conference, Boston, July 26-28
R conference Bioconductor
updated 21 days ago by 39k • written 6.2 years ago by 26k
2
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1
reply
1.5k
views
News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop OSG Biomedicine HTC
updated 16 days ago by 39k • written 5.8 years ago by ▴ 10
6
votes
1
reply
898
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 14 days ago by 39k • written 5.4 years ago by ★ 2.2k
0
votes
1
reply
996
views
News: Registration deadline: Comparative genomics
snp SVs
updated 7 days ago by 39k • written 4.8 years ago by ★ 2.3k
0
votes
1
reply
1.4k
views
News: Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL
STACKs RADseq
updated 14 days ago by 39k • written 5.6 years ago by ★ 2.3k
0
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1
reply
1.6k
views
News: Spatio-temporal Transcriptome of LncRNAs in Human Brain
Parkinson lncRNA Alzheimer brain transcriptome
updated 16 days ago by 39k • written 5.9 years ago by ▴ 850
2
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1
reply
1.8k
views
News: Genomic Data Visualization and Interpretation Workshop
next-gen R genome RNA-Seq
updated 19 days ago by 39k • written 5.9 years ago by ★ 2.3k
3
votes
1
reply
1.2k
views
News: GATK returns to a fully open-source license
gatk
updated 19 days ago by 39k • written 6.0 years ago by 98k
0
votes
1
reply
885
views
News: Help GIAB manually curate benchmark SVs!
giab
updated 9 days ago by 39k • written 5.0 years ago by 154k
3
votes
1
reply
2.0k
views
News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 14 days ago by 39k • written 5.6 years ago by 154k
1
vote
1
reply
1.1k
views
News: Ensembl Perl API course, April 2018
course api ensembl perl training
updated 13 days ago by 39k • written 5.4 years ago by 23k
3
votes
1
reply
6.4k
views
News: LinkedOmics - a web portal for TCGA/CPTAC data
TCGA cptac cancer
updated 14 days ago by 39k • written 5.5 years ago by 129k
2
votes
1
reply
1.2k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 19 days ago by 39k • written 6.0 years ago by ▴ 610
0
votes
1
reply
1.4k
views
News: Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants RNA-Seq alignment Strand-NGS
updated 12 days ago by 39k • written 5.3 years ago by ▴ 70
0
votes
1
reply
2.1k
views
News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS NGS RNA-Seq UMI dna-seq
updated 14 days ago by 39k • written 5.6 years ago by ▴ 70
0
votes
1
reply
841
views
News: Genomic bioinformatics service provider
next-gen-sequencing genome RNA-Seq ChIP-Seq
updated 6 days ago by 39k • written 4.5 years ago by • 0
4
votes
1
reply
1.7k
views
News: Bioinformatics Contest 2018
contest
updated 13 days ago by 39k • written 5.4 years ago by ▴ 40
0
votes
1
reply
1.4k
views
News: Trinity Workshop: De novo Transcriptome Assembly, Annotation, and Downstream Expression Studies. Berlin 12-16 June (4 places left)
next-gen Assembly RNA-Seq
updated 21 days ago by 39k • written 6.2 years ago by ★ 2.3k
0
votes
1
reply
1.1k
views
News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 5 days ago by 39k • written 4.4 years ago by ★ 2.3k
0
votes
1
reply
700
views
News: Do you want to improve your knowledge and skills in the R programming language?
R Programming
updated 1 day ago by 39k • written 4.1 years ago by ★ 2.3k
0
votes
1
reply
2.2k
views
News: Hands-on training in Bioinformatics and Biomedical Data Science
NGS training
updated 7 days ago by 39k • written 4.7 years ago by ▴ 10
0
votes
1
reply
1.0k
views
News: New Alexa skill provides voice-based access to Protein Data Bank data
protein-structure pdb
updated 14 days ago by 39k • written 5.6 years ago by • 0
510 results • Page 2 of 11
Recent Votes
Considering gaps in calculating conservation score from MSA
Comment: ggsave() bug in ggplot2?
Comment: How to calculate kinship matrix table from vcf file
including samples for which group is unknown to help adjust for another variable
Comment: including samples for which group is unknown to help adjust for another variable
Answer: ggsave() bug in ggplot2?
Comment: ggsave() bug in ggplot2?
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Recent Replies
Comment: BioInformatics, Software by Vincent Laufer ★ 2.9k
biostars.org is a great website for that
Answer: BioInformatics, Software by Jesse ▴ 560
Here's a couple that are geared toward hands-on bioinformatics learning: * [rosalind.info](https://rosalind.info) * [sandbox.bio](htt…
Comment: ggsave() bug in ggplot2? by Medeea • 0
Yes, ggsave("Figure1.pdf") works very good as well!
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy by Jeremy Leipzig 21k
> So how GATK called this ref allele if there is no reads supporting it it didn't call it reference. it called it hom_alt. where in your f…
Comment: mutational signatures in different tumor samples by Vincent Laufer ★ 2.9k
as far as im concerned, thats a recommendation not a disclaimer
Comment: including samples for which group is unknown to help adjust for another variable by Vincent Laufer ★ 2.9k
Actually, I just remembered the perfect paper to illustrate that idea. Look at this: https://pubmed.ncbi.nlm.nih.gov/35976223/. In this man…
Comment: including samples for which group is unknown to help adjust for another variable by Vincent Laufer ★ 2.9k
yep! updated my answer to respond to this. i think they ARE biological variables. it is understanding the nature of those variables that is…
Answer: ggsave() bug in ggplot2? by Medeea • 0
I think the issue is solved with saving the file as .png There must be a problem with the .jpg format then. Thanks everyone for the va…
Comment: ggsave() bug in ggplot2? by Ram 39k
Try PDF. You won't need dpi for that. Also, do things work well if you use the lower level `png(); ggplot(); dev.off();` sequence instead o…
Comment: How to calculate kinship matrix table from vcf file by chrchang523 10k
The last vcftools release was in 2018. It has been superseded by bcftools for most purposes, and by plink 1.9/2.0 for most analytical func…
Comment: NarrowPeak format -Peak field by ATpoint 72k
I do not follow, can you please add a chr-start-end example.
Comment: BioPython: convert fasta to fastq without quality score input file by capemaster • 0
The command with `gawk` is: awk 'BEGIN {RS = ">" ; FS = "\n"} NR > 1 {print $1"\n"$2"\n+\n"gensub(/./, "I", "g", $2)}'
Comment: The inchworm process failed. Trinity running error. by GenoMax 129k
So with 600M reads you will need a minimum of 600GB of RAM per trinity recommendations. If you are not able to get more memory consider no…
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy by Ram 39k
I don't understand what you're saying. Your allele is different from the ref allele so it needs the sample to support that? Why? Give me t…
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy by mohsamir2016 ▴ 30
Sure, but n my case 1/1 the allel is different from the reference allele and it called it as T, for instance. So it needs reads in the samp…
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