Limit : this month
all time today this week this month this year
27 results • Page 1 of 1
Sort: replies
Rank Views Votes Replies
8
votes
2
replies
781
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
22 days ago by David Langenberger 11k
12
votes
2
replies
449
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
17 days ago by David Langenberger 11k
3
votes
2
replies
585
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
29 days ago by Johannes W. Dietrich • 0
0
votes
0
replies
181
views
News: Online course: Network Analysis in R
NetworkAnalyis R
13 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
116
views
News: 8th Berlin Summer School in NGS Data Analysis - Apply Now
DNA-seq variant-calling RNA-seq illumina transcriptomics
updated 1 day ago by 43k • written 3 days ago by 11k
0
votes
0
replies
147
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
26 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
143
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 12 days ago by 43k • written 12 days ago by ▴ 380
0
votes
0
replies
184
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 15 days ago by 43k • written 16 days ago by ★ 2.5k
2
votes
0
replies
125
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 16 days ago by 43k • written 16 days ago by ▴ 70
3
votes
0
replies
121
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 4 days ago by 43k • written 4 days ago by ★ 2.5k
0
votes
0
replies
112
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 2 days ago by 43k • written 3 days ago by ★ 2.5k
0
votes
0
replies
107
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 1 day ago by 43k • written 2 days ago by ★ 2.5k
3
votes
0
replies
121
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 22 hours ago by 43k • written 1 day ago by ▴ 60
2
votes
0
replies
124
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 16 days ago by 43k • written 16 days ago by ▴ 70
1
vote
0
replies
175
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 19 days ago by 43k • written 21 days ago by ★ 2.5k
2
votes
0
replies
116
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
17 days ago by Transmitting Science communication ▴ 70
0
votes
0
replies
175
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 11 days ago by 43k • written 11 days ago by 11k
1
vote
0
replies
130
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 16 days ago by 43k • written 16 days ago by ▴ 70
0
votes
0
replies
144
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 24 days ago by 43k • written 24 days ago by ★ 2.5k
0
votes
0
replies
83
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
5 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
121
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 19 days ago by 43k • written 19 days ago by ★ 2.5k
0
votes
0
replies
208
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 29 days ago by 43k • written 29 days ago by ★ 2.5k
0
votes
0
replies
176
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 9 days ago by 43k • written 9 days ago by ★ 2.5k
0
votes
0
replies
190
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 9 days ago by 43k • written 9 days ago by ★ 2.5k
2
votes
0
replies
118
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 17 days ago by 43k • written 17 days ago by ★ 2.5k
0
votes
0
replies
171
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 29 days ago by 43k • written 29 days ago by ★ 2.5k
0
votes
0
replies
132
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 6 days ago by 43k • written 6 days ago by ★ 2.5k
27 results • Page 1 of 1
Recent Votes
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
How do I find out the read lenght of a fastq file?
Calculate Allele balance by sample
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
Answer: Is there a tool that sorts gtf files?
Answer: gvcf joint calling
Answer: Heatmap and rna-seq
Recent Locations • All
Whitefish, MT, 5 minutes ago
United States, 6 minutes ago
United States, 10 minutes ago
Saudi Arabia, 12 minutes ago
Italy, 22 minutes ago
Europe, 25 minutes ago
United States, 27 minutes ago
Recent Awards • All
Popular Question to rohitsatyam102 ▴ 850
Popular Question to candron ▴ 10
Scholar to Alex Reynolds 35k
Popular Question to chaco001 ▴ 40
Commentator to GenoMax 141k
Popular Question to rheab1230 ▴ 140
Popular Question to BioinfGuru ★ 1.7k
Recent Replies
Answer: absolute path for symbolic links in Snakefile by Jesse ▴ 740
It's nothing to do with Snakemake, just the ordinary confusion of making relative symlinks when your working directory is somewhere else. …
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in by Jesse ▴ 740
[seqmagick](https://github.com/fhcrc/seqmagick/) has a `--squeeze-threshold` option that does just this. For example with an MSA of five s…
Comment: Source other conda environments in a nextflow pipeline when nextflow itself is i by Arup Ghosh 3.2k
Use the standalone version of Nextflow and specify the process-specific conda environments paths.
Comment: gvcf joint calling by Jeremy Leipzig 22k
can you show us an exonic position in your VCF file that is all `./.`?
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC: by O.rka ▴ 710
Thank you. This answers my question. The reason I am asking is because I’m trying to do set enrichment analysis with BRENDA pathways using…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i by colindaven 6.4k
I used to use nextflow in a conda env. That requires the env to be active when a pipeline is started. Also I have productive pipelines whic…
Comment: different FeatureCounts output for the same data by Istvan Albert 100k
just to clarify, it is not that the program algorithm works differently but the meaning of the flags changed; before -p was sufficient to…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by BioinfGuru ★ 1.7k
Thanks Ram. Using merge maxed out my ram on a large list, but your suggestion directed me to purrr::reduce which works great.
Comment: ScRNA data question by starswillfade ▴ 10
features <- SelectIntegrationFeatures(object.list = merged_dat) data.anchors <- FindIntegrationAnchors(object.list = merged_dat, …
Comment: gvcf joint calling by zihanss • 0
Thank you for your help! I really appreciate it! And you know, the merged WES gVCF files still have "NA" loci. For such cases, I am quite …
Comment: Correct way to compare multiple treaments between RNA-Seq samples using edgeR? by Guille • 0
Thank you for your answer! The MDS plot seems to group most treatment groups close-by, so I'm starting to suspect the effect of treatment …
Answer: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC: by Mensur Dlakic ★ 27k
They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
Comment: Heatmap and rna-seq by dsull ★ 5.8k
https://maayanlab.cloud/clustergrammer/ It's a web-based tool (can also be a python jupyter widget) that I find useful for exploring a pat…
Answer: Limma Analysis Agilent Microarray Data (GPL1708) by Gordon Smyth ★ 7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler. I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR? by Gordon Smyth ★ 7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1. Have you exam…
Traffic: 1734 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6