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16 results • Page
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News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
14 days ago by
Ming Tommy Tang
★ 3.6k
3
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146
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News:
NCBI BLAST+ 2.2.15 now available for download
NCBI
Taxonomy
BLAST
13 days ago by
PeterC_NCBI
▴ 370
1
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181
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News:
course - Advanced Python Programming
Python-Programming
updated 26 days ago by
Ram
41k • written 26 days ago by
carlopecoraro2
★ 2.4k
0
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0
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128
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News:
Online expert taught RNA-Seq workshop
workshop
13 days ago by
fturner
▴ 10
0
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131
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News:
Course - RNAseq in non-model organisms
Pacbio
RNA-seq
Nanopore
updated 17 hours ago by
Ram
41k • written 14 days ago by
carlopecoraro2
★ 2.4k
0
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0
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53
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News:
Online course: Introduction to Python, February 12th-March 11th, 2024
python
courses
21 hours ago by
Sole
• 0
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158
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News:
Course: Genome Assembly using Oxford Nanopore Sequencing
Genome-Assembly
Nanopore
updated 16 hours ago by
Ram
41k • written 22 days ago by
carlopecoraro2
★ 2.4k
0
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0
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158
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News:
Genemod - Lab Management Software
lab-management-software
research
updated 21 days ago by
Ram
41k • written 22 days ago by
Genemod
• 0
0
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167
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News:
Course - Computational Tumor Evolution
Tumor-Evolution
Cancer-Genomics
updated 17 hours ago by
Ram
41k • written 17 days ago by
carlopecoraro2
★ 2.4k
0
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1
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127
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News:
Course: Genome Assembly and Annotation
Biodiversity
Genome-Assembly
Genome-Annotation
Long-reads
updated 17 hours ago by
Ram
41k • written 4 days ago by
carlopecoraro2
★ 2.4k
0
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0
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182
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News:
GWAS course
R
GWAS
updated 17 hours ago by
Ram
41k • written 11 days ago by
carlopecoraro2
★ 2.4k
0
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3
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1.0k
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News:
:: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq
NGS
RNA-Seq
Workshop
21 days ago by
David Langenberger
10k
0
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154
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Course - Introduction to Bayesian Data Analysis
R
Statistics
Bayesian
Regression-Modeling
updated 17 hours ago by
Ram
41k • written 29 days ago by
carlopecoraro2
★ 2.4k
0
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0
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126
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News:
Course - Introduction to R Shiny
R
Data-Visualisation
Shiny
updated 16 hours ago by
Ram
41k • written 13 days ago by
carlopecoraro2
★ 2.4k
0
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0
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166
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News:
GWAS course
R
GWAS
updated 26 days ago by
Ram
41k • written 27 days ago by
carlopecoraro2
★ 2.4k
0
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0
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190
views
News:
Next-Generation Sequencing Data Analysis: A Practical Introduction (Nov 29 – Dec 1 in Munich, Germany)
RNAseq
DNAseq
NGS
Workshop
17 days ago by
Lars
★ 1.0k
16 results • Page
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Recent Votes
Comment: 4 Fastq files for a single run generated by 10X
Comment: 4 Fastq files for a single run generated by 10X
Answer: How do you generate TMM normalized counts using EdgeR?
The Biostar Handbook. A bioinformatics e-book for beginners.
GEO dataset Microarray data analysis help
C: Batch effects : ComBat or removebatcheffects (limma package) ?
Answer: Batch effects : ComBat or removebatcheffects (limma package) ?
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Comment: 4 Fastq files for a single run generated by 10X
by
hkarakurt
▴ 180
Thank you for your detailed answer. I will check the reads and compare them with chemistry manual as you suggested. Thank you again for yo…
Comment: Microarray batch correction method suggestions
by
Sumeet
• 0
Thank you @atpoint for your response. However, aim of analysing to generate a matrix with all dataset available after batch correction.
Comment: what should I do if I get a compromised sample of scRNA-seq data?
by
ATpoint
78k
Agreed. I would just force the cells to 5000 or so, and then proceed with the normal QC. If there's a lot of trash "cells" in the dataset t…
Comment: How to download multiple genome files using command line (MacOS) using datasets
by
rj.rezwan
• 0
you should use the `wild cards` to download all the given above GCF files. Moverover, you can use the commands of `curl` , `wget` and `slow…
Comment: Microarray batch correction method suggestions
by
ATpoint
78k
This has been asked so many times before. Analyse them separately, then make a statement on reproducibility of results using a meta-analysi…
Comment: Microbial gene coverage from blast result
by
aanchal.yadav
• 0
What is qcovhsp (high scoring segment pair) in BLAST output. Can we use this parameter to calculate the gene coverage?
Answer: Best way to normalize transcript reads data for PCA & correlation and further bi
by
Jeremy
▴ 860
Scaling the data will give you Z-scores. This is a standard way of preparing data for PCA. I would also suggest trying a center-log-ratio…
Comment: How to resolve the error of protein lacking a stop codon when using GenomeThread
by
peanut
• 0
Thank you for your answer,but after verifying the protein file, it seems there is no problem. Even if there are missing codons, the program…
Comment: Help with gatk CreateSequenceDictionary
by
Chris
▴ 230
It worked! Thanks Matt!
Comment: Finding human .vcf files online to download
by
cmdcolin
★ 3.4k
i can't really tell you why your code doesn't work if you dont provide it. and, if you describe as much as possible what your goals are, th…
Answer: Help with gatk CreateSequenceDictionary
by
MatthewP
★ 1.3k
maybe try?: -R /variant_calling/Desktop/demo/supporting_files/hg38/hg38.fa -O /variant_calling/Desktop/demo/supporting_files/hg38/hg3…
Comment: Java error while running HiCDC overview code
by
Brian Bushnell
20k
Looks like you have corrupt or improperly-formatted input. It's expecting to parse a floating-point number where the word "score" appears.…
Comment: what should I do if I get a compromised sample of scRNA-seq data?
by
dsull
★ 5.1k
The knee plot is just one type of QC. I'd say just proceed with your analysis and see if you observe anything funky (analysis itself is a Q…
Comment: Annotation GTF/GFF Arabidopsis thaliana
by
enriquesan
• 0
...........
Comment: FastQC without yellow box
by
lobelino
• 0
Thank you for your answer.
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