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News: GWAS course in June
GWAS
updated 12 months ago by 43k • written 13 months ago by ★ 2.5k
1
vote
1
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693
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News: 20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS nextflow RNAseq pipelines DNAseq
13 months ago by David Langenberger 11k
0
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470
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News: Single-cell RNAseq with R/Bioconductor course
scRNAseq Bioconductor R
updated 12 months ago by 43k • written 13 months ago by ★ 2.5k
0
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0
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382
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News: Environmental Metagenomics - 17-21 April
MAGs Metagenomics
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
1
vote
0
replies
475
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News: Announcing the 3rd round of the Nextflow and nf-core mentorship
nf-core mentorship nf_core nextflow
updated 13 months ago by 43k • written 13 months ago by ▴ 470
1
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444
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News: New open access publication on ElasticBLAST in BMC Bioinformatics
NCBI ElasticBLAST BLAST
13 months ago by PeterC_NCBI ▴ 410
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454
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News: Pangenomics course in April!
Pangenomics Prokaryotic-Genomics
13 months ago by carlopecoraro2 ★ 2.5k
1
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0
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624
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News: Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
scrna-seq
updated 13 months ago by 43k • written 13 months ago by 82k
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0
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461
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News: Cellosaurus release 45 is available
knowledgebase cell-line
updated 10 months ago by 43k • written 13 months ago by ▴ 120
0
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0
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409
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News: Virtual RAD-seq Analysis Workshop!
workshops popgen genomics rad-seq
13 months ago by mia.nahom ▴ 10
0
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754
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News: The Canadian Bioinformatics Workshops are back for summer 2023
CBW training workshop
13 months ago by bioinformatics.ca • 0
0
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422
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News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
13 months ago by Stephen • 0
0
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0
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489
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News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
13 months ago by Stephen • 0
0
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0
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427
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News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
13 months ago by Sole • 0
0
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2
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899
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News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
10
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4
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1.3k
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 14 months ago by ▴ 30 • written 15 months ago by 11k
1
vote
0
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955
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
1
vote
1
reply
678
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News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
14 months ago by jared.andrews07 ★ 16k
1
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444
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News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
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0
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450
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News: Environmental Metagenomics course
Environmental-Metagenomics
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
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427
views
News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 12 months ago by 43k • written 14 months ago by ★ 2.5k
1
vote
0
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493
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
14 months ago by mia.nahom ▴ 10
1
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0
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453
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News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
14 months ago by carlopecoraro2 ★ 2.5k
0
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0
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385
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News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
14 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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453
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News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
14 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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392
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
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0
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578
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News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
5
votes
3
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921
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News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 14 months ago by ▴ 340 • written 15 months ago by 4.6k
0
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1
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430
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News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 15 months ago by 43k • written 15 months ago by ★ 2.5k
0
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0
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397
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News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
15 months ago by carlopecoraro2 ★ 2.5k
0
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0
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481
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News: Introduction to GWAS course in June
GWAS R
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
0
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0
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745
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News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 15 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
replies
362
views
News: Course - Version Control for Researchers
VersionControl GIT Github
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
520
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 15 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
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400
views
News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 15 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
3
replies
909
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News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
15 months ago by PeterC_NCBI ▴ 410
0
votes
0
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379
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News: Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor MassSpectrometry R Proteomics
15 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
595
views
News: Course - Machine Learning in R (for omics data)
Genomics omics MachineLearning R
15 months ago by carlopecoraro2 ★ 2.5k
2
votes
0
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424
views
News: Course - Reproducibility in Bioinformatics
Reproducibility
updated 15 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
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384
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News: course - Multivariate data analysis with R and vegan
Statistics MultivariateAnalysis R vegan
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
2
replies
1.1k
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
15 months ago by David Langenberger 11k
0
votes
0
replies
471
views
News: Bioinformatics courses in February
Genomics Bioinformatics-Training
updated 11 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
replies
1.3k
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
15 months ago by PeterC_NCBI ▴ 410
1
vote
2
replies
690
views
News: Course: Network Analysis in R
NetworkAnalyis R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
479
views
News: de novo RNA-seq Analysis Workshop
virtual workshop rna transcriptome
16 months ago by mia.nahom ▴ 10
0
votes
0
replies
624
views
News: Genomic Prediction course
Selective-Breeding Genomic-Prediction
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
1
vote
0
replies
696
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
16 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
558
views
News: GSEA in R/Bioconductor course
Bioconductor R GSEA GeneSetEnrichmentAnalysis
16 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
940
views
News: For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI GenBank
16 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
478
views
News: Metabarcoding in Microbial Ecology
Metabarcoding Qiime2 16S MicrobialEcology R
16 months ago by carlopecoraro2 ★ 2.5k
1,000 results • Page 5 of 20
Recent Votes
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
A: How can I convert -log10 (p-value) to p-value?
Comment: What does the 'E%' represent in BUSCO results?
Answer: What does the 'E%' represent in BUSCO results?
Answer: Combine Two Affymetrix Datasets With Same Platform
Comment: Kraken2 database
Comment: How does gene length effect the number of reads mapped
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Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Vijith ▴ 30
By doing some online search, I tried installing one module `cpan Bio::DB::Fasta` and it is running like a never-ending installation process…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Vijith ▴ 30
I have tried installing AGAT. But it failed the tests. …
Comment: BWA alignment by ATpoint 82k
That is not what the logs above tell, but good you solved it.
Answer: Inquiry about deseq2 transformation by ATpoint 82k
The transformations first correct for sequencing depth (and [composition][1]) and then apply the variance stabilization / regularization. N…
Answer: The total expressed genes in RNA-Seq data by ATpoint 82k
There is no robust definition of "expressed" genes, this has been asked many times before. edgeR doesn't care about "expressed", it cares (…
Answer: What is the bin size for Bamcompare? by ATpoint 82k
It is the number of adjacent bases that are aggregated (binned) into a single value. I find binning not optimal, and would always set this …
Comment: Is it necessary to do genotype quality filteration after snp calling with GATK by Pierre Lindenbaum 161k
see VQSR https://gatk.broadinstitute.org/hc/en-us/articles/360035531612-Variant-Quality-Score-Recalibration-VQSR and https://gatk.broadinst…
Comment: Snakemake wrapper issue by Matvii Mykhailichenko • 0
Hi, I kind of did and kind of didn't: I stopped trying to use snakemake( I remember that it's a lot of hustle to install pickard, maybe you…
Answer: Is there any way to modify this pie chart ? by marco.barr ▴ 100
Hi, you can add the labels outside chart using `geom_label_repel` from `ggrepel` package. Check out this guide [https://r-charts.com/part…
Answer: Snakemake wrapper issue by Wei-Chen Pan • 0
Hi, did you solve your problem ? I also encounter same issue but it's `wrapper:"v3.9.0/bio/picard/mergevcfs"`. In my log file, it said:…
Comment: What does the 'E%' represent in BUSCO results? by Philipp Bayer 8.5k
No worries! I found the commit with the maths too: https://gitlab.com/ezlab/busco/-/blame/master/src/busco/busco_tools/hmmer.py?page=2#L135…
Comment: What does the 'E%' represent in BUSCO results? by 林明德 • 0
Thank you for your answer! It really helped me resolve a doubt!
Answer: What does the 'E%' represent in BUSCO results? by Philipp Bayer 8.5k
Ah your edit solved this. 50 BUSCOs contain internal stop codons, indicating they might be erroneous gene models, or the genes themselves a…
Answer: MGLTools does not work in windows 11 by Ashfaq • 0
In my case, I did not see iGPU. There is only one option, Intel UHD Graphics. What I need to do?
Comment: What does the 'E%' represent in BUSCO results? by Philipp Bayer 8.5k
funny enough i tried the same thing (i've used BUSCO heaps times but never saw the E:! even the manual lists 'C:89.0%[S:85.8%,D:3.2%],F:6.9…
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