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1,000 results • Page
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News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
8 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
394
views
News:
Course - Data Visualization in R with ggplot2
R
Data-Visualization
ggplot2
updated 9 months ago by
Ram
43k • written 9 months ago by
carlopecoraro2
★ 2.5k
38
votes
7
replies
2.3k
views
News:
2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics
DNA-Seq
Variant-Calling
RNA-Seq
9 months ago by
David Langenberger
11k
9
votes
4
replies
2.5k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by
Ram
43k • written 2.7 years ago by
chen
★ 2.5k
0
votes
0
replies
491
views
News:
Course - RADseq data analysis with Stacks
RADseq
Phylogenomics
Stacks
Population-genomics
updated 8 months ago by
Ram
43k • written 9 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
432
views
News:
course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms
DNA-Methylation
BS-seq
updated 8 months ago by
Ram
43k • written 9 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
545
views
News:
Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
9 months ago by
Marcel Ribeiro-Dantas
▴ 470
0
votes
0
replies
443
views
News:
2-day Course on Introduction to Nextflow
Workflow
Reproducibility
Nextflow
updated 9 months ago by
Ram
43k • written 9 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
421
views
News:
Physalia courses in September
Genomics
R
Data-Science
updated 9 months ago by
Ram
43k • written 9 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
451
views
News:
Cellosaurus release 46
knowledgebase
cell-line
cellosaurus
10 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
339
views
News:
Course - Data Manipulation and Visualization in Python
Data-Manipulation
Data-Visualisation
Python
updated 10 months ago by
Ram
43k • written 10 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
506
views
News:
Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
10 months ago by
sinha.shriprakash
▴ 20
0
votes
0
replies
504
views
News:
Course on Generalised Linear Mixed Models in R
GLMM
R
Statistics
Mixed-Models
updated 10 months ago by
Ram
43k • written 10 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
460
views
News:
Course - Network Analysis in Systems Biology with R/Bioconductor
R
Systems-Biology
Network-Analysis
Bioconductor
updated 8 months ago by
Ram
43k • written 10 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
377
views
News:
course on Reproducibility data analysis with R
R
Reproducibility
Git
Github
10 months ago by
carlopecoraro2
★ 2.5k
38
votes
8
replies
1.6k
views
6 follow
News:
What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq
DNA
WGS
updated 10 months ago by
Alex Reynolds
35k • written 10 months ago by
David Langenberger
11k
4
votes
0
replies
648
views
News:
A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS
RNA-Seq
single-cell
workshop
10 months ago by
David Langenberger
11k
0
votes
0
replies
705
views
News:
Hands-On NGS Data Analysis Courses 2023
RNA-seq
DNA-seq
Workshop
updated 10 months ago by
Ram
43k • written 10 months ago by
David Langenberger
11k
1
vote
0
replies
505
views
News:
Course - Introduction to Deep Learning for biologists
Genomics
Deep-Learning
Python
NGS
updated 10 months ago by
Ram
43k • written 10 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
437
views
News:
Good bioinformatics training resources
NGS
updated 10 months ago by
Pierre Lindenbaum
161k • written 10 months ago by
ManuelDB
▴ 80
0
votes
0
replies
544
views
News:
Generalized Linear Models (GLM) course in R
R
GLM
statistics
11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
470
views
News:
course - Advanced Python programming
Python
Deep-Learning
Machine-Learning
updated 8 months ago by
Ram
43k • written 11 months ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
689
views
News:
Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF
SARS-CoV-2
NCBI
Codeathon
11 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
422
views
News:
Virtual Genome Annotation Workshop
annotation
genome
workshop
11 months ago by
mia.nahom
▴ 10
0
votes
0
replies
693
views
News:
Course - Longitudinal data analysis in R
Longitudinal-Data
R
Genomics
updated 11 months ago by
Ram
43k • written 11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
417
views
News:
New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST
BLAST.
NCBI
11 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
384
views
News:
Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics
CRISPR
11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.5k
views
News:
GWAS course
GWAS
R
updated 11 months ago by
Ram
43k • written 11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
489
views
News:
Course - RNAseq data analysis with R/Bioconductor
R
Tidyverse
RNA-seq
Bioconductor
updated 8 months ago by
Ram
43k • written 11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
442
views
News:
Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis
Spatial-Omics
updated 11 months ago by
Ram
43k • written 11 months ago by
carlopecoraro2
★ 2.5k
3
votes
3
replies
1.2k
views
News:
NCBI's IgBLAST version 1.21.0 is now available
IgBLAST
BLAST
T-Cell
NCBI
receptors
11 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
381
views
News:
course- Population genomic inference from low-coverage whole-genome sequencing data
Whole-Genome-Sequencing
Population-Genomics
updated 11 months ago by
Ram
43k • written 11 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
391
views
News:
PROGRAMMING IN R : MOVING FROM BEGINNER TO ADVANCED
Programming
Training
R
11 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
848
views
News:
NCBI BLAST+ 2.14.0 release includes faster protein and translation search options
NCBI
BLAST
11 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
545
views
News:
Get Your Science going in 10 Minutes with the Biostar Handbook!
education
biostarhandbook
updated 11 months ago by
Ram
43k • written 12 months ago by
Istvan Albert
100k
0
votes
0
replies
396
views
News:
Course - Network Analysis in Systems Biology with R/Bioconductor
R
Network-Analysis
Bioconductor
Systems-Biology
updated 11 months ago by
Ram
43k • written 12 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
438
views
News:
Course - Phylogenetic Comparative Methods in R
Comparative-Methods
R
Phylogenetics
updated 11 months ago by
Ram
43k • written 12 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
1.3k
views
News:
20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS
DNA-Seq
variant-calling
RNA-Seq
workshop
12 months ago by
David Langenberger
11k
1
vote
0
replies
441
views
News:
Course - Statistics for biologists with R
Statistics
R
12 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
483
views
News:
GWAS course in June
GWAS
updated 11 months ago by
Ram
43k • written 12 months ago by
carlopecoraro2
★ 2.5k
1
vote
1
reply
681
views
News:
20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS
nextflow
RNAseq
pipelines
DNAseq
12 months ago by
David Langenberger
11k
0
votes
0
replies
465
views
News:
Single-cell RNAseq with R/Bioconductor course
scRNAseq
Bioconductor
R
updated 11 months ago by
Ram
43k • written 12 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
376
views
News:
Environmental Metagenomics - 17-21 April
MAGs
Metagenomics
updated 12 months ago by
Ram
43k • written 12 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
456
views
News:
Announcing the 3rd round of the Nextflow and nf-core mentorship
nf-core
mentorship
nf_core
nextflow
updated 12 months ago by
Ram
43k • written 12 months ago by
Marcel Ribeiro-Dantas
▴ 470
1
vote
0
replies
438
views
News:
New open access publication on ElasticBLAST in BMC Bioinformatics
NCBI
ElasticBLAST
BLAST
13 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
445
views
News:
Pangenomics course in April!
Pangenomics
Prokaryotic-Genomics
13 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
620
views
News:
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
scrna-seq
updated 13 months ago by
Ram
43k • written 13 months ago by
ATpoint
82k
0
votes
0
replies
455
views
News:
Cellosaurus release 45 is available
knowledgebase
cell-line
updated 10 months ago by
Ram
43k • written 13 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
404
views
News:
Virtual RAD-seq Analysis Workshop!
workshops
popgen
genomics
rad-seq
13 months ago by
mia.nahom
▴ 10
0
votes
0
replies
749
views
News:
The Canadian Bioinformatics Workshops are back for summer 2023
CBW
training
workshop
13 months ago by
bioinformatics.ca
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1,000 results • Page
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Recent Votes
Comment: NGS forensics: how to know if data is fabricated
A: Hard time trying to calculate Allele Frequency and DP from Platypus
Answer: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
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Recent Replies
Answer: Finding batch and outlayers
by
Tigran
• 0
![enter image description here][1] [1]: /media/images/aa60b9ef-b08c-4093-9f0d-fb656a5c
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Can you post an IGV screenshot of what this looks like?
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Yeah some of the Illumina machines pre-trim adapters (not sure if this is still the standard). I've also definitely also seen quality-trimm…
Comment: PDB related issue
by
noodle
▴ 530
You can typically find much more useful info in the cif file, for example what you've found is called '_atom_site.pdbx_PDB_ins_code ' and d…
Comment: PDB related issue
by
Mensur Dlakic
★ 27k
The best way to find out is to read the original paper. My guess is that the residue has been crystallized in alternative conformations, wh…
Answer: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I downloaded the data in two files from the link you provided. With this command: megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
If you have Linux the assembly should work on your system, but 8 GB is generally not enough for assembling larger genomes.
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I think you might be getting stuck on less relevant parts of my exercise. The most important point was that nothing is wrong with the data.…
Comment: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
Great comprehensive explanation and overview of the technologies -- with regards to sequencing assays, the one thing I'd add is SNV identif…
Answer: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
I think that term means slightly different things in different contexts. For example, it's useful to profile mRNA modifications (e.g. m6a) …
Comment: Cannot process all the reads in a fast5 file?
by
chujie
• 0
Hi, I met the same problem, have you found the solution?
Answer: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
Hi @fe3e6f65 , In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
Comment: PCA plot
by
LauferVA
4.2k
Without more context, we cannot interpret this PCA plot. There are many possibilities. In addition, this question is basic enough that it w…
Comment: NGS forensics: how to know if data is fabricated
by
Jeremy Leipzig
22k
i have the name ready: out**liar**
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