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1,000 results • Page
6 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
461
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
25 days ago by
Ashok
• 0
0
votes
0
replies
231
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 25 days ago by
Ram
43k • written 25 days ago by
samuelkalandarov2002
▴ 10
0
votes
2
replies
465
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
24 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
227
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
21 days ago by
Javier
• 0
0
votes
0
replies
208
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
25 days ago by
enferdeflame
• 0
1
vote
1
reply
452
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 23 days ago by
Gordon Smyth
★ 7.1k • written 25 days ago by
Chris
▴ 280
0
votes
1
reply
416
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 25 days ago by
Ram
43k • written 20 months ago by
Muhammad
• 0
0
votes
0
replies
173
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 25 days ago by
Ram
43k • written 26 days ago by
bioinfo223
▴ 10
0
votes
0
replies
195
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
26 days ago by
P.
• 0
0
votes
0
replies
184
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
26 days ago by
ekirsch
• 0
1
vote
1
reply
518
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
24 days ago by
renan.igor
• 0
0
votes
0
replies
211
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
26 days ago by
synat.keam
▴ 100
0
votes
1
reply
305
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 26 days ago by
GenoMax
142k • written 26 days ago by
ycts
• 0
0
votes
4
replies
652
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
25 days ago by
Kai Xin
• 0
1
vote
1
reply
255
views
Retrieve a % coverage for each transcript
RNA-seq
updated 26 days ago by
Ram
43k • written 26 days ago by
jammydodger123456
▴ 40
0
votes
2
replies
425
views
How can I solve this error?
metal
26 days ago by
22211020193
• 0
0
votes
0
replies
187
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 26 days ago by
GenoMax
142k • written 26 days ago by
srimmer
• 0
1
vote
4
replies
400
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 3 days ago by
GenoMax
142k • written 26 days ago by
aniigodwinn
• 0
0
votes
0
replies
372
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
26 days ago by
Ronin
• 0
2
votes
7
replies
937
views
Removing duplicates
duplicates
ONT
minimap2
updated 25 days ago by
noodle
▴ 580 • written 26 days ago by
quentinperriere
• 0
0
votes
1
reply
228
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 26 days ago by
DKA
▴ 40 • written 26 days ago by
james.melhorn
• 0
0
votes
1
reply
221
views
Freyja plot error
Freyja
updated 26 days ago by
Ram
43k • written 26 days ago by
Adyasha
• 0
0
votes
0
replies
177
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
27 days ago by
chemokine-1
▴ 10
0
votes
4
replies
575
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
26 days ago by
feather-W
• 0
0
votes
2
replies
300
views
Bedmethyl file format
bedmethyl
methylation
updated 26 days ago by
GenoMax
142k • written 27 days ago by
njornet
▴ 20
0
votes
0
replies
194
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
27 days ago by
Ali
• 0
2
votes
4
replies
369
views
SnpEff annotates coding duplication as intronic?
snpeff
27 days ago by
kirill.zaslavsky
• 0
0
votes
2
replies
294
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
26 days ago by
mropri
▴ 150
0
votes
0
replies
167
views
Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownames
rownames
RNA-Seq
WGCNA
unique
27 days ago by
shasabhi1
• 0
0
votes
0
replies
155
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
27 days ago by
Nishat
• 0
0
votes
0
replies
183
views
what exactly is a k-mer table (remora)?
remora
basecall
27 days ago by
anne
• 0
1
vote
1
reply
205
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 27 days ago by
dsull
★ 6.0k • written 27 days ago by
niruf
• 0
0
votes
0
replies
162
views
GWAS Phenotypes
GWAS
27 days ago by
solomoncharles77
▴ 90
0
votes
2
replies
362
views
GSEA analysis in R
GSEA
R
Arabidopsis
25 days ago by
Sudip
• 0
0
votes
0
replies
137
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
27 days ago by
QX
• 0
2
votes
5
replies
551
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
27 days ago by
Bikram Kumar
• 0
0
votes
2
replies
301
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 27 days ago by
Ram
43k • written 28 days ago by
David
• 0
1
vote
2
replies
311
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
27 days ago by
bioinfo
▴ 150
0
votes
1
reply
224
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 28 days ago by
bk11
★ 2.4k • written 28 days ago by
sinhas
• 0
0
votes
1
reply
245
views
merging Seurat objects after SCT
Seurat
SCT
updated 28 days ago by
Ram
43k • written 28 days ago by
michelle.swarovski
• 0
0
votes
1
reply
280
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 28 days ago by
GenoMax
142k • written 28 days ago by
haiying.kong
▴ 360
0
votes
2
replies
307
views
RNAseq 1 control 2 different treatment
RNA-seq
27 days ago by
matteo.levorato
• 0
1
vote
0
replies
163
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 28 days ago by
Ram
43k • written 28 days ago by
Oscar
▴ 10
2
votes
0
replies
229
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
28 days ago by
Alexander
▴ 220
1
vote
6
replies
377
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 10 days ago by
GenoMax
142k • written 28 days ago by
eebloom
▴ 80
0
votes
0
replies
154
views
Automated internal stop codon checker
ORF
stopcodon
internal
virus
28 days ago by
Balazs Horvath
▴ 10
0
votes
0
replies
154
views
Repeat expansion identification tools for long-read data
fragilex
repeatexpansion
long-read
fmr1
28 days ago by
adarsh_pp
▴ 40
0
votes
0
replies
164
views
FreeBayes detection capacity
reads
freebayes
long
29 days ago by
quentinperriere
• 0
0
votes
2
replies
296
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
26 days ago by
DKA
▴ 40
0
votes
0
replies
176
views
Plotting heatmap of genes in each samples scRNA in Seurat
scRNA
heatmap
29 days ago by
Hien
• 0
1,000 results • Page
6 of 20
Recent Votes
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Comment: What does the 'E%' represent in BUSCO results?
Answer: What does the 'E%' represent in BUSCO results?
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Comment: Kraken2 database
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Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
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Comment: What does the 'E%' represent in BUSCO results?
by
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8.5k
No worries! I found the commit with the maths too: https://gitlab.com/ezlab/busco/-/blame/master/src/busco/busco_tools/hmmer.py?page=2#L135…
Comment: What does the 'E%' represent in BUSCO results?
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Thank you for your answer! It really helped me resolve a doubt!
Answer: What does the 'E%' represent in BUSCO results?
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Ah your edit solved this. 50 BUSCOs contain internal stop codons, indicating they might be erroneous gene models, or the genes themselves a…
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8.5k
funny enough i tried the same thing (i've used BUSCO heaps times but never saw the E:! even the manual lists 'C:89.0%[S:85.8%,D:3.2%],F:6.9…
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