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Tutorial:
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Tutorial:
multi-omics data integration: a case study with transcriptomics and genomics mutation data
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Ming Tommy Tang
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written 5.8 years ago by
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Have you installed any software into your base environment?
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This might not necessarily be the best way to do an RNA-Seq analysis. RNA-Seq is famously sensitive to all sorts of factors like who did th…
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Yes, you are correct. However, there are several things you should consider:
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> This is the entry for your example accession: https://www.uniprot.org/uniprotkb?query=proteome%3AUP000005640+AND+C9J7I0
I would recommen…
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Return a vector of common DEGs
```R
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If it's difficult to tell from RNA-seq data, what other approaches I should use?
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
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langziv
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I modified the question so that instead of genes the question refers to CDSs.
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
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langziv
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Thanks.
Is there an approach or a guideline to filter such sequences?
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There are tools to combine output from blast in tabulated format like in the example here [enter link description here][1](see functional …
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I solved the problem in the end. I was under the impression that the reference sequence had to be provided in a separate fasta file:
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