Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
2
replies
5.7k
views
Best set of tools / workflows for predicting the biosynthesis pathways of complex organic molecules
ngs pathways
updated 17 days ago by 45k • written 6 weeks ago by ▴ 60
1
vote
3
replies
7.2k
views
Best way to do protein structure guided similarity search?
alphafold BLAST structure proteins
updated 7 weeks ago by ★ 2.9k • written 7 weeks ago by ▴ 60
2
votes
2
replies
9.9k
views
Automatically annotating a feature using a genbank file
Annotation genbank wgs
updated 8 weeks ago by 166k • written 8 weeks ago by ▴ 60
4
votes
2
replies
1.6k
views
combine hifiasm and hifiasm-ont assemblies.
wgs ngs genomics sequencing
updated 3 months ago by ★ 1.8k • written 3 months ago by ▴ 60
0
votes
1
reply
419
views
Run hifiasm without error correction module?
hifiasm assembly wgs nanopore genomics
updated 4 months ago by ★ 1.8k • written 4 months ago by ▴ 60
1
vote
0
replies
531
views
Any tips for optimizing an all vs all alignment with minimap2
mapping nanopore genomics minimap2
5 months ago by Mark ▴ 60
0
votes
0
replies
590
views
Comment: Comment: How to fix this this tangle in my bacterial genome assembly
5 months ago by Mark ▴ 60
2
votes
2
replies
590
views
How to fix this this tangle in my bacterial genome assembly
misassembly assembly genomics ngs
5 months ago by Mark ▴ 60
0
votes
2
replies
696
views
Is there a way to import a large amount of regions of interest into IGV
sequencing igv genomics ngs
updated 7 months ago by 154k • written 7 months ago by ▴ 60
2
votes
1
reply
1.2k
views
Recommendations for Reference-guided de novo assembly assembly approaches or pipelines?
ont assembly wgs nanopore genomics
updated 7 months ago by ★ 1.8k • written 7 months ago by ▴ 60
3
votes
1
reply
1.1k
views
Subset reads based on Phred-score ranges
phred sequencing ngs
updated 8 months ago by 154k • written 8 months ago by ▴ 60
3
votes
7
replies
1.2k
views
Best way to assess relatedness of eukaryotic organisms from sequencing reads?
phylogenomics phylogenetics ngs kmer sequencing
updated 8 months ago by 8.1k • written 8 months ago by ▴ 60
0
votes
0
replies
524
views
DeChat Nanopore read correction with Medaka correction?
ont medaka wgs dechat nanopore
8 months ago by Mark ▴ 60
0
votes
0
replies
699
views
Looking to Simulate Nanopore R10.4.1 and PacBio HiFi whole genome sequencing reads for 3 specific organisms
pacbio nanopore sequencing reads wgs
9 months ago by Mark ▴ 60
6
votes
3
replies
1.2k
views
Convert Long Nanopore reads to Illumina Paired end reads
illumina sequencing reads nanopore
updated 9 months ago by 166k • written 9 months ago by ▴ 60
2
votes
1
reply
1.0k
views
Question about Kraken2 core_nt vs nt database results.
database kraken2 kmer ncbi
updated 9 months ago by 154k • written 9 months ago by ▴ 60
0
votes
1
reply
812
views
Comment: Comment: Kmerfinder database with bacteria, archea, and eukaryotic data
9 months ago by Mark ▴ 60
0
votes
3
replies
812
views
Kmerfinder database with bacteria, archea, and eukaryotic data
kmer
updated 9 months ago by 16k • written 9 months ago by ▴ 60
0
votes
2
replies
749
views
Question about metabolic pathway prediction using only DNA sequencing data
metabolism genomics ngs
updated 11 months ago by ▴ 60 • written 11 months ago by ▴ 60
2
votes
1
reply
881
views
Strategy to find transgene copy number and integration sites using only Nanopore simplex reads?
sequencing transgenes ngs
updated 12 months ago by 8.1k • written 12 months ago by ▴ 60
1
vote
2
replies
1.4k
views
Why use Hi-C and/or Bionano for scaffolding when Nanopore sequencing exists?
wgs hic sequencing nanopore genomics
updated 12 months ago by ★ 1.8k • written 12 months ago by ▴ 60
5
votes
2
replies
925
views
Is there an easy way to scrape a whole bunch of NCBI RefSeq FASTA from NCBI?
FASTA Genome NCBI
updated 12 months ago by 8.7k • written 12 months ago by ▴ 60
0
votes
0
replies
1.0k
views
Comment: Comment: Basic question but how can I search the NCBI Nucleotide database using BLAST CLI
12 months ago by Mark ▴ 60
2
votes
2
replies
1.0k
views
Basic question but how can I search the NCBI Nucleotide database using BLAST CLI
cli blast
12 months ago by Mark ▴ 60
3
votes
4
replies
1.2k
views
Recommendations for performing Bulk RNA sequencing on non-model organism with poor genome annotation?
RNA-seq
updated 14 months ago by ★ 1.9k • written 14 months ago by ▴ 60
0
votes
0
replies
1.0k
views
Comment: Comment: Does it make sense to use scRNAseq for this experiment?
17 months ago by Mark ▴ 60
3
votes
2
replies
1.0k
views
Does it make sense to use scRNAseq for this experiment?
scRNA-seq
17 months ago by Mark ▴ 60
0
votes
0
replies
840
views
Comment: Comment: Is there a program that can predict the sequence of an organisms telomeres just
20 months ago by Mark ▴ 60
0
votes
2
replies
840
views
Is there a program that can predict the sequence of an organisms telomeres just from raw sequencing reads
telomeres genomics sequencing
20 months ago by Mark ▴ 60
0
votes
0
replies
1.4k
views
Any tools for finding the telomere sequences / lengths directly for nanopore sequencing reads without any prior knowledge of the organism
genomics telomeres reads
23 months ago by Mark ▴ 60
5
votes
4
replies
1.6k
views
Is there a good software to generate test genomics data?
genomics testing benchmarking
updated 23 months ago by 20k • written 23 months ago by ▴ 60
0
votes
0
replies
1.5k
views
For people doing high molecular weight DNA sequencing library prep, do you see a steep drop off in the fragment sizes before and after the library pr…
library-prep sequencing ont nanopore ngs
23 months ago by Mark ▴ 60
0
votes
0
replies
1.7k
views
Comment: Comment: Best software to get summary statistics from nanopore sequencing runs
24 months ago by Mark ▴ 60
4
votes
4
replies
1.7k
views
Best software to get summary statistics from nanopore sequencing runs
wgs nanopore sequencing
24 months ago by Mark ▴ 60
2
votes
1
reply
810
views
Can someone help me explain this part of a lecture regarding gene finding HMM's
HMM gene-prediction
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 60
0
votes
0
replies
687
views
Any way to predict hormone biosynthesis pathways in understudied organisms?
genomics orthologs biosynthesis-pathway
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 60
4
votes
5
replies
2.6k
views
For high quality Telomere to telomere assemblies, is short read polishing still necessary
genome illumina sequencing nanopore wgs
updated 2.1 years ago by ★ 2.5k • written 2.2 years ago by ▴ 60
3
votes
2
replies
1.6k
views
Best pipeline / resources / tools for whole genome assembly in a haploid organism
haploid sequencing genomics nanopore wgs
updated 2.2 years ago by ★ 2.2k • written 2.2 years ago by ▴ 60
3
votes
2
replies
2.0k
views
Best pipeline / resources / tools for whole genome assembly
wgs nanopore Sequencing
updated 2.3 years ago by 10k • written 2.3 years ago by ▴ 60
5
votes
3
replies
2.0k
views
how can i filter a sam file from a paf file
paf sam filter
updated 2.6 years ago by 90k • written 2.6 years ago by ▴ 60
1
vote
2
replies
2.4k
views
Best way to visualize .paf or .sam alignment to a fasta file
visualization sam fasta paf alignment
updated 2.6 years ago by 8.1k • written 2.6 years ago by ▴ 60
0
votes
1
reply
933
views
Tool to identify mutations following global alignment?
Mutation alignment analysis genomics
updated 2.7 years ago by ▴ 570 • written 2.7 years ago by ▴ 60
4
votes
4
replies
2.5k
views
Does anyone know how to create a sequence annotation figure like this?
genome gene sequence annotation chromosome
updated 3.8 years ago by • 0 • written 3.8 years ago by ▴ 60
43 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6