Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
572
views
Best set of tools / workflows for predicting the biosynthesis pathways of complex organic molecules
ngs pathways bioinformatics
updated 9 hours ago by 22k • written 10 hours ago by ▴ 60
1
vote
3
replies
6.1k
views
Best way to do protein structure guided similarity search?
alphafold BLAST structure proteins
updated 5 days ago by ★ 2.9k • written 6 days ago by ▴ 60
2
votes
2
replies
9.6k
views
Automatically annotating a feature using a genbank file
Annotation genbank wgs
updated 10 days ago by 166k • written 10 days ago by ▴ 60
4
votes
2
replies
1.1k
views
combine hifiasm and hifiasm-ont assemblies.
wgs ngs genomics sequencing
updated 6 weeks ago by ★ 1.8k • written 6 weeks ago by ▴ 60
0
votes
1
reply
354
views
Run hifiasm without error correction module?
hifiasm assembly wgs nanopore genomics
updated 12 weeks ago by ★ 1.8k • written 12 weeks ago by ▴ 60
1
vote
0
replies
450
views
Any tips for optimizing an all vs all alignment with minimap2
mapping nanopore genomics minimap2
3 months ago by Mark ▴ 60
0
votes
0
replies
523
views
Comment: Comment: How to fix this this tangle in my bacterial genome assembly
3 months ago by Mark ▴ 60
2
votes
2
replies
523
views
How to fix this this tangle in my bacterial genome assembly
misassembly assembly genomics ngs
3 months ago by Mark ▴ 60
0
votes
2
replies
602
views
Is there a way to import a large amount of regions of interest into IGV
sequencing igv genomics ngs
updated 6 months ago by 153k • written 6 months ago by ▴ 60
2
votes
1
reply
998
views
Recommendations for Reference-guided de novo assembly assembly approaches or pipelines?
ont assembly wgs nanopore genomics
updated 6 months ago by ★ 1.8k • written 6 months ago by ▴ 60
3
votes
1
reply
987
views
Subset reads based on Phred-score ranges
phred sequencing ngs
updated 6 months ago by 153k • written 6 months ago by ▴ 60
3
votes
7
replies
1.1k
views
Best way to assess relatedness of eukaryotic organisms from sequencing reads?
phylogenomics phylogenetics ngs kmer sequencing
updated 6 months ago by 7.9k • written 6 months ago by ▴ 60
0
votes
0
replies
463
views
DeChat Nanopore read correction with Medaka correction?
ont medaka wgs dechat nanopore
7 months ago by Mark ▴ 60
0
votes
0
replies
650
views
Looking to Simulate Nanopore R10.4.1 and PacBio HiFi whole genome sequencing reads for 3 specific organisms
pacbio nanopore sequencing reads wgs
7 months ago by Mark ▴ 60
6
votes
3
replies
1.0k
views
Convert Long Nanopore reads to Illumina Paired end reads
illumina sequencing reads nanopore
updated 7 months ago by 166k • written 7 months ago by ▴ 60
2
votes
1
reply
817
views
Question about Kraken2 core_nt vs nt database results.
database kraken2 kmer ncbi
updated 7 months ago by 153k • written 7 months ago by ▴ 60
0
votes
1
reply
690
views
Comment: Comment: Kmerfinder database with bacteria, archea, and eukaryotic data
8 months ago by Mark ▴ 60
0
votes
3
replies
690
views
Kmerfinder database with bacteria, archea, and eukaryotic data
kmer
updated 8 months ago by 15k • written 8 months ago by ▴ 60
0
votes
2
replies
646
views
Question about metabolic pathway prediction using only DNA sequencing data
metabolism genomics ngs
updated 9 months ago by ▴ 60 • written 9 months ago by ▴ 60
2
votes
1
reply
795
views
Strategy to find transgene copy number and integration sites using only Nanopore simplex reads?
sequencing transgenes ngs
updated 10 months ago by 7.9k • written 10 months ago by ▴ 60
1
vote
2
replies
1.1k
views
Why use Hi-C and/or Bionano for scaffolding when Nanopore sequencing exists?
wgs hic sequencing nanopore genomics
updated 10 months ago by ★ 1.8k • written 10 months ago by ▴ 60
5
votes
2
replies
787
views
Is there an easy way to scrape a whole bunch of NCBI RefSeq FASTA from NCBI?
FASTA Genome NCBI
updated 11 months ago by 8.7k • written 11 months ago by ▴ 60
0
votes
0
replies
931
views
Comment: Comment: Basic question but how can I search the NCBI Nucleotide database using BLAST CLI
11 months ago by Mark ▴ 60
2
votes
2
replies
931
views
Basic question but how can I search the NCBI Nucleotide database using BLAST CLI
cli blast
11 months ago by Mark ▴ 60
3
votes
4
replies
1.1k
views
Recommendations for performing Bulk RNA sequencing on non-model organism with poor genome annotation?
RNA-seq
updated 13 months ago by ★ 1.9k • written 13 months ago by ▴ 60
0
votes
0
replies
944
views
Comment: Comment: Does it make sense to use scRNAseq for this experiment?
15 months ago by Mark ▴ 60
3
votes
2
replies
944
views
Does it make sense to use scRNAseq for this experiment?
scRNA-seq
15 months ago by Mark ▴ 60
0
votes
0
replies
756
views
Comment: Comment: Is there a program that can predict the sequence of an organisms telomeres just
18 months ago by Mark ▴ 60
0
votes
2
replies
756
views
Is there a program that can predict the sequence of an organisms telomeres just from raw sequencing reads
telomeres genomics sequencing
18 months ago by Mark ▴ 60
0
votes
0
replies
1.4k
views
Any tools for finding the telomere sequences / lengths directly for nanopore sequencing reads without any prior knowledge of the organism
genomics telomeres reads
22 months ago by Mark ▴ 60
5
votes
4
replies
1.5k
views
Is there a good software to generate test genomics data?
genomics testing benchmarking
updated 22 months ago by 20k • written 22 months ago by ▴ 60
0
votes
0
replies
1.4k
views
For people doing high molecular weight DNA sequencing library prep, do you see a steep drop off in the fragment sizes before and after the library pr…
library-prep sequencing ont nanopore ngs
22 months ago by Mark ▴ 60
0
votes
0
replies
1.6k
views
Comment: Comment: Best software to get summary statistics from nanopore sequencing runs
22 months ago by Mark ▴ 60
4
votes
4
replies
1.6k
views
Best software to get summary statistics from nanopore sequencing runs
wgs nanopore sequencing
22 months ago by Mark ▴ 60
2
votes
1
reply
770
views
Can someone help me explain this part of a lecture regarding gene finding HMM's
HMM gene-prediction
updated 23 months ago by 45k • written 23 months ago by ▴ 60
0
votes
0
replies
589
views
Any way to predict hormone biosynthesis pathways in understudied organisms?
genomics orthologs biosynthesis-pathway
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 60
4
votes
5
replies
2.4k
views
For high quality Telomere to telomere assemblies, is short read polishing still necessary
genome illumina sequencing nanopore wgs
updated 2.0 years ago by ★ 2.4k • written 2.0 years ago by ▴ 60
3
votes
2
replies
1.5k
views
Best pipeline / resources / tools for whole genome assembly in a haploid organism
haploid sequencing genomics nanopore wgs
updated 2.0 years ago by ★ 2.2k • written 2.0 years ago by ▴ 60
3
votes
2
replies
1.8k
views
Best pipeline / resources / tools for whole genome assembly
wgs nanopore Sequencing
updated 2.2 years ago by 10k • written 2.2 years ago by ▴ 60
5
votes
3
replies
1.9k
views
how can i filter a sam file from a paf file
paf sam filter
updated 2.5 years ago by 89k • written 2.5 years ago by ▴ 60
1
vote
2
replies
2.3k
views
Best way to visualize .paf or .sam alignment to a fasta file
visualization sam fasta paf alignment
updated 2.5 years ago by 7.9k • written 2.5 years ago by ▴ 60
0
votes
1
reply
883
views
Tool to identify mutations following global alignment?
Mutation alignment analysis genomics
updated 2.6 years ago by ▴ 570 • written 2.6 years ago by ▴ 60
4
votes
4
replies
2.3k
views
Does anyone know how to create a sequence annotation figure like this?
genome gene sequence annotation chromosome
updated 3.7 years ago by • 0 • written 3.7 years ago by ▴ 60
43 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6