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0
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1
reply
533
views
ArchR Doublet Inference to Signac
Signac scATAC-seq ArchR
updated 6 weeks ago by ★ 1.6k • written 14 months ago by ▴ 20
0
votes
1
reply
605
views
Error in H5Fopen
atac-seq scatac-seq
updated 5 months ago by • 0 • written 22 months ago by ▴ 20
0
votes
0
replies
295
views
Performing GO analysis from Differential Peaks
clusterProfiler Signac analysis atac-seq go
12 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
422
views
Please help with edgeR script
edgeR
updated 12 months ago by ★ 1.8k • written 12 months ago by ▴ 20
0
votes
0
replies
366
views
Too many differential peaks derived from FindMarkers() [Signac]
Signac ATAC scATAC-seq
12 months ago by bioinformatics.girl ▴ 20
3
votes
5
replies
3.7k
views
edgeR, Pseudobulk scRNA-seq
seurat scrna-seq edgeR
updated 12 months ago by ★ 7.1k • written 12 months ago by ▴ 20
0
votes
4
replies
973
views
Remove string from Seurat object metadata
seurat scrna
updated 12 months ago by 3.9k • written 12 months ago by ▴ 20
0
votes
3
replies
963
views
PSEUDOBULK HELP-DE Expression in scRNA-seq
scRNA-seq seurat
updated 12 months ago by ★ 1.8k • written 12 months ago by ▴ 20
0
votes
1
reply
593
views
Remove string from Seurat Object
scRNA seurat
updated 12 months ago by ★ 1.6k • written 12 months ago by ▴ 20
0
votes
0
replies
379
views
Seurat Object Manipulation
seurat scATAC signac
12 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
296
views
Subsetting ATAC dataset
DARs scATAC-seq scATAC
12 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
378
views
scATAC integration
scatac-seq integration
updated 13 months ago by 142k • written 13 months ago by ▴ 20
0
votes
1
reply
484
views
ATAC Integration Help
scatac-seq integration atac-seq
updated 14 months ago by ▴ 50 • written 14 months ago by ▴ 20
0
votes
3
replies
1.1k
views
Seurat Metadata to Dataframe Manipulation
rstudio seurat scrna-seq
updated 14 months ago by ▴ 390 • written 14 months ago by ▴ 20
1
vote
2
replies
858
views
MACS to Signac
scatac-seq
updated 14 months ago by 82k • written 14 months ago by ▴ 20
1
vote
1
reply
543
views
MACS Error
scatac-seq peak-calling Macs
updated 14 months ago by 43k • written 14 months ago by ▴ 20
1
vote
8
replies
3.1k
views
R Columns to Seurat Object
seurat scrna-seq
updated 14 months ago by • 0 • written 15 months ago by ▴ 20
0
votes
2
replies
646
views
scATAC-seq workflow
Signac scATAC-seq
15 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
344
views
scATAC merging of files
Signac scATAC-seq
15 months ago by bioinformatics.girl ▴ 20
0
votes
7
replies
1.9k
views
CoveragePlot in Signac from MACS2 Object
Signac scATAC-seq
updated 15 months ago by 11k • written 15 months ago by ▴ 20
0
votes
1
reply
368
views
SetAllIdents and Idents function not found
scrna-seq
updated 15 months ago by ★ 27k • written 15 months ago by ▴ 20
2
votes
5
replies
1.5k
views
UMAP Cluster separation
seurat ggplot umap scrna-seq
15 months ago by bioinformatics.girl ▴ 20
0
votes
2
replies
637
views
Fisher Exact Test against two Seurat Objects
superexacttest fisher seurat scrna-seq
15 months ago by bioinformatics.girl ▴ 20
2
votes
6
replies
1.4k
views
Error in Seurat ScaleData() function
seurat scrna-seq snrna-seq
updated 16 months ago by 142k • written 16 months ago by ▴ 20
0
votes
3
replies
2.1k
views
UMAP labeling manipulation
scrna-seq seurat umap
16 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
947
views
Error with Tabix file
Signac atac atac-seq
updated 16 months ago by 161k • written 16 months ago by ▴ 20
0
votes
2
replies
691
views
Why can't I quantify the peaks (scATAC)?
Signac ATAC snATAC scATAC
17 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
304
views
CellBender vs CellRanger
snrna-seq
18 months ago by bioinformatics.girl ▴ 20
0
votes
2
replies
559
views
When to merge scRNA datasets
scRNA-seq scRNA seurat
18 months ago by bioinformatics.girl ▴ 20
1
vote
2
replies
558
views
.BAM to .BED to Coverage Plots
scATAC-seq Macs scatac signac
18 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
547
views
ArchRtoSignac
archr archrtosignac archr2signac signac
updated 19 months ago by 142k • written 19 months ago by ▴ 20
0
votes
0
replies
287
views
Calling peaks with MACS following Bedtools
bedtools scATAC-seq signac
updated 10 months ago by 43k • written 19 months ago by ▴ 20
2
votes
5
replies
1.1k
views
Using Harmony on scATAC Count Files
scatac-seq ArchR Signac
21 months ago by bioinformatics.girl ▴ 20
1
vote
1
reply
473
views
How to create count file from fastq files
cellranger scATAC-seq cellranger-atac
updated 21 months ago by 142k • written 21 months ago by ▴ 20
8
votes
15
replies
2.8k
views
8 follow
gunzip error: File not in gzip format
gunzip linux gzip
updated 22 months ago by 11k • written 22 months ago by ▴ 20
0
votes
2
replies
1.2k
views
"Object of type 'closure' is not subsettable" Error
atac-seq scatac-seq archr
updated 22 months ago by 8.9k • written 22 months ago by ▴ 20
6
votes
29
replies
3.2k
views
Column lengths differ error (ArchR)
atac-seq cellranger r archr
updated 22 months ago by 142k • written 23 months ago by ▴ 20
0
votes
0
replies
696
views
Error in createArrowFiles ArchR Analysis
snatac-seq archr scatac-seq archrgenome atac-seq
23 months ago by bioinformatics.girl ▴ 20
0
votes
4
replies
2.1k
views
ERROR: "Fragment file is not indexed"
atac-seq cellranger snatac-seq
23 months ago by bioinformatics.girl ▴ 20
0
votes
4
replies
1.2k
views
Could not find function "CreateChromatinAssay"
atac-seq 10x cellranger snatac-seq
updated 23 months ago by 21k • written 23 months ago by ▴ 20
40 results • Page 1 of 1
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