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4.5k
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Comment: C: Correct for GC content bias RNASeq DE
7.1 years ago by debitboro ▴ 260
3
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2
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4.5k
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Correct for GC content bias RNASeq DE
RNA-Seq GC content Normalization
updated 7.1 years ago by 6.5k • written 7.1 years ago by ▴ 260
0
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1
reply
2.4k
views
download gene expression data
gene-expression
updated 13 months ago by 43k • written 7.2 years ago by ▴ 260
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1
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1.8k
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filtering or not the gtf annotation file from ncRNA, tRNA, and rRNA before mapping ?
RNA-Seq
updated 13 months ago by 43k • written 7.2 years ago by ▴ 260
0
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1
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1.3k
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How to get SNP data, DNA methylation, and proteomic data ?
SNP data DNA Methylation data proteomic data
7.3 years ago by debitboro ▴ 260
0
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1
reply
2.3k
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How to get the normalized counts matrix
normalization EDASeq UQ
7.3 years ago by debitboro ▴ 260
4
votes
7
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3.6k
views
Using of WGCNA to identify modules in Normal/Tumor tissues
WGCNA module-trait correlation NA value
updated 7.4 years ago by 20 • written 7.5 years ago by ▴ 260
7
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4
replies
7.8k
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Differences between co-expression and co-regulation
co-expression co-regulation
updated 7.4 years ago by ★ 1.2k • written 7.4 years ago by ▴ 260
0
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1
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4.8k
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Comment: C: WGCNA heatmap modules-trait relationship
7.5 years ago by debitboro ▴ 260
5
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6
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4.8k
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WGCNA heatmap modules-trait relationship
WGCNA heatmap modules-trait relationship
7.5 years ago by debitboro ▴ 260
0
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0
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288k
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Comment: C: Gene Id Conversion Tool
7.7 years ago by debitboro ▴ 260
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2
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3.1k
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How can I get the gene annotation file from Illumina (RNA Sequencing) ?
RNA-Seq Gene annotation file illumina
updated 7.7 years ago by 8.7k • written 7.7 years ago by ▴ 260
0
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3
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5.2k
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Gene length table from gtf file for rpkm() function
gene length HTSeq count RPKM edgeR
updated 20 months ago by 7.5k • written 7.8 years ago by ▴ 260
1
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2
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1.4k
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Check if RNASeq count data follow NB or Poisson distributions
RNA-Seq Negative Binomial Poisson distribution
updated 7.9 years ago by 104k • written 7.9 years ago by ▴ 260
0
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0
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2.2k
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Comment: C: RNASeq DE analysis between tumor and normal tissues
7.9 years ago by debitboro ▴ 260
1
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2
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2.2k
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RNASeq DE analysis between tumor and normal tissues
RNA-Seq DE analysis HTSeq-count DESeq2
7.9 years ago by debitboro ▴ 260
0
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0
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2.3k
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Comment: C: Cufflinks: exceeded memory limit (31836604 > 31457280), being killed
7.9 years ago by debitboro ▴ 260
1
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2
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2.3k
views
Cufflinks: exceeded memory limit (31836604 > 31457280), being killed
Cufflinks memory limit slurm
8.0 years ago by debitboro ▴ 260
1
vote
1
reply
2.4k
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Memory and Runtime Cufflinks
cufflinks runtime tophat2
8.0 years ago by debitboro ▴ 260
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0
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2.4k
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Comment: C: Splitting fastq file for mapping with tophat2
8.0 years ago by debitboro ▴ 260
1
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3
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2.4k
views
Splitting fastq file for mapping with tophat2
RNA-Seq tophat2 fatsq files splitting
updated 8.0 years ago by ★ 1.4k • written 8.0 years ago by ▴ 260
0
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1
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2.4k
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Comment: C: Tophat2 mapping takes a lot of time
8.0 years ago by debitboro ▴ 260
0
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1
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2.4k
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Comment: C: Tophat2 mapping takes a lot of time
8.0 years ago by debitboro ▴ 260
2
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5
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4.3k
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Indexing human reference genome before STAR Mapping
STAR Indexing Error Mapping
8.0 years ago by debitboro ▴ 260
0
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2
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4.3k
views
Answer: A: Indexing human reference genome before STAR Mapping
8.0 years ago by debitboro ▴ 260
0
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0
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4.3k
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Comment: C: Indexing human reference genome before STAR Mapping
8.0 years ago by debitboro ▴ 260
0
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0
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1.8k
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Tophat2 error when mapping using -G option
RNA-Seq tophat2 mapping with -G option
8.0 years ago by debitboro ▴ 260
3
votes
2
replies
1.7k
views
select chr22 lines from Ensembl GTF file
gtf files chr22.gtf RNA-Seq Ensembl
updated 8.0 years ago by 23k • written 8.0 years ago by ▴ 260
1
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0
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1.7k
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Comment: C: select chr22 lines from Ensembl GTF file
8.0 years ago by debitboro ▴ 260
0
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4
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1.8k
views
Tophat2 error when mapping a sample file to a reference
rna-seq seqtk sampling
8.0 years ago by debitboro ▴ 260
0
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1
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1.8k
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Comment: A: Tophat2 error when mapping a sample file to a reference
8.0 years ago by debitboro ▴ 260
0
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0
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1.8k
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Comment: C: Tophat2 error when mapping a sample file to a reference
8.0 years ago by debitboro ▴ 260
13
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14
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4.7k
views
8 follow
RNA-Seq for DE analysis
RNA-Seq Differential Expression Analysis
updated 8.0 years ago by ★ 2.4k • written 8.1 years ago by ▴ 260
1
vote
1
reply
2.6k
views
RNA-Seq Mapping and bowtie2 indexing
RNA-Seq Mapping Bowtie2 indexing
8.0 years ago by debitboro ▴ 260
0
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1
reply
22k
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Comment: C: Cleaning RNA-Seq data from rRNA
8.1 years ago by debitboro ▴ 260
0
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1
reply
22k
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Comment: C: Cleaning RNA-Seq data from rRNA
8.1 years ago by debitboro ▴ 260
0
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1
reply
11k
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Comment: C: Fastqc for RNA-Seq data (Illumina 1.9)
8.1 years ago by debitboro ▴ 260
20
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12
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11k
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Fastqc for RNA-Seq data (Illumina 1.9)
RNA-Seq Fastqc Kmer content
updated 8.1 years ago by 54k • written 8.1 years ago by ▴ 260
0
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1
reply
2.2k
views
SNP: direction of effects
SNP direction of effects GWAS
8.3 years ago by debitboro ▴ 260
2
votes
2
replies
2.9k
views
Problem with the plink output file for adjusted Bonferroni test
significant-SNP Bonferroni SNP plink INF
updated 2.2 years ago by 43k • written 9.9 years ago by ▴ 260
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