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1
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6
replies
3.3k
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target vs. bait BED files for Illumina WES
sequencing Illumina WES whole-exome
updated 13 months ago by 154k • written 3.3 years ago by ▴ 140
0
votes
1
reply
13k
views
Comment: Comment: GSEA preranking metric for RNA Seq
3.6 years ago by Juan Cordero ▴ 140
2
votes
2
replies
1.6k
views
How to combine datasets from different sequencing platforms?
RNASeq Expression Differential Normalization
updated 4.4 years ago by 23k • written 4.4 years ago by ▴ 140
0
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0
replies
1.5k
views
Comment: C: Exclusion of miRNA microarray probes in PDX models
7.5 years ago by Juan Cordero ▴ 140
0
votes
2
replies
1.5k
views
Exclusion of miRNA microarray probes in PDX models
microarray affy xenograft pdx clariom
7.5 years ago by Juan Cordero ▴ 140
0
votes
0
replies
2.7k
views
Answer: A: What is the specificity of a Microarray for human vs. mouse when completed for a
7.5 years ago by Juan Cordero ▴ 140
0
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0
replies
2.9k
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Comment: C: Find out if a protein has an ortholog in EggNog DB
7.5 years ago by Juan Cordero ▴ 140
0
votes
3
replies
2.9k
views
Find out if a protein has an ortholog in EggNog DB
eggnog orthologs human
updated 7.6 years ago by • 0 • written 9.7 years ago by ▴ 140
2
votes
4
replies
2.6k
views
How to automatically find the right species name when there are typos, using Entrez.esearch?
Biopython Entrez taxonomy
updated 8.3 years ago by ★ 1.9k • written 8.3 years ago by ▴ 140
1
vote
2
replies
2.7k
views
constitutive vs core exons?
splicing exons microarrays
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 140
0
votes
0
replies
1.7k
views
Comment: C: How to choose automatically the most representative (widely used) strain for bac
8.4 years ago by Juan Cordero ▴ 140
1
vote
2
replies
1.7k
views
How to choose automatically the most representative (widely used) strain for bacteria species
bacteria choose reference strain proteomes
8.4 years ago by Juan Cordero ▴ 140
1
vote
2
replies
2.1k
views
Best ortholog/inparalog detection between human genes and species from different clades
ortholog detection evolution
updated 8.5 years ago by ★ 1.5k • written 8.5 years ago by ▴ 140
0
votes
0
replies
3.9k
views
Comment: C: How to exclude probes from affy microarray before normalization?
8.6 years ago by Juan Cordero ▴ 140
0
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1
reply
3.9k
views
Comment: C: How to exclude probes from affy microarray before normalization?
8.6 years ago by Juan Cordero ▴ 140
0
votes
7
replies
3.9k
views
How to exclude probes from affy microarray before normalization?
microarrays affy probes bioconductor
updated 8.6 years ago by 5.8k • written 8.6 years ago by ▴ 140
0
votes
1
reply
3.9k
views
Answer: C: How to exclude probes from affy microarray before normalization?
8.6 years ago by Juan Cordero ▴ 140
0
votes
4
replies
2.8k
views
GSEA for organisms with no GO terms?
GSEA GO
updated 8.8 years ago by ▴ 10 • written 9.3 years ago by ▴ 140
0
votes
1
reply
2.2k
views
Is it possible to run the GETHOGs algorithm on already computed pairs of orthologs from OMA?
OMA
updated 8.9 years ago by ▴ 740 • written 8.9 years ago by ▴ 140
0
votes
1
reply
4.1k
views
Comment: C: How To Judge If A Pfam Domain Is A Repeat And The Functional Similarities Of A S
9.0 years ago by Juan Cordero ▴ 140
1
vote
0
replies
2.7k
views
How to parse HMMSCAN output to enable comparison of domain architecture for several proteins
hmmer pfam domain architecture homology
9.0 years ago by Juan Cordero ▴ 140
0
votes
1
reply
2.3k
views
GSEA for qPCR data
GSEA GO qPCR
updated 9.1 years ago by 20 • written 9.6 years ago by ▴ 140
1
vote
1
reply
1.9k
views
Cluster species into taxonomic groups by tax ID
taxonomic tree tax id clustering
9.1 years ago by Juan Cordero ▴ 140
0
votes
1
reply
2.8k
views
Comment: C: GSEA for organisms with no GO terms?
9.3 years ago by Juan Cordero ▴ 140
2
votes
1
reply
4.1k
views
GSEA Analysis: rank genes by fold change, t-statistic, U-statistic or KS-statistic?
microarrays gsea ranking
updated 9.3 years ago by 20 • written 9.3 years ago by ▴ 140
0
votes
0
replies
1.9k
views
Comment: C: how to exclude/include microarray chip based on pseudo-images?
9.4 years ago by Juan Cordero ▴ 140
0
votes
2
replies
1.9k
views
how to exclude/include microarray chip based on pseudo-images?
affy microarray quality control
9.4 years ago by Juan Cordero ▴ 140
1
vote
4
replies
2.6k
views
Differential expression in qPCR Data after filtering
qPCR differential expression
updated 9.5 years ago by 105k • written 9.5 years ago by ▴ 140
1
vote
2
replies
2.9k
views
How to choose calibrator (housekeeping) genes for RT-qPCR normalisation
normalization RT-qPCR housekeeping-genes
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 140
1
vote
4
replies
2.1k
views
best qPCR normalisation method
normalization microRNA
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 140
0
votes
0
replies
2.1k
views
Comment: C: best microRNA normalisation method
9.7 years ago by Juan Cordero ▴ 140
0
votes
1
reply
4.9k
views
Convert AffyBatch object to ExpressionFeatureSet object
Microarrays R Bioconductor Affymetrix
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 140
6
votes
3
replies
34k
views
Best method/package for Gene Set Enrichment Analysis in R?
GSEA Bioconductor GO
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 140
0
votes
0
replies
34k
views
Comment: C: Best method/package for Gene Set Enrichment Analysis in R?
10.0 years ago by Juan Cordero ▴ 140
0
votes
0
replies
1.7k
views
background probes for MTA in RASA
microarrays affy mouse transcriptome-arrays RASA
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 140
0
votes
2
replies
1.7k
views
Does RASA work for Gene Expression arrays?
Affy RASA Gene expression arrays
written 10.1 years ago by ▴ 140
0
votes
0
replies
3.7k
views
Comment: C: Affy Mouse Transcriptome Array analysis with Bioconductor
10.1 years ago by Juan Cordero ▴ 140
2
votes
2
replies
3.7k
views
Affy Mouse Transcriptome Array analysis with Bioconductor
RNA-Seq Bioconductor Affymetrix-arrays
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 140
7
votes
1
reply
2.7k
views
Should I aggregate probeset expression by mean instead of considering them as independent instances?
Microarray-data Bioconductor R
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 140
1
vote
1
reply
2.4k
views
How to select GO terms once you've calculated ontologies?
Bioconductor GO-enrichment-analysis R
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 140
5
votes
1
reply
4.0k
views
What to do with outliers from Microarray quality control?
Microarrays outliers bioconductor quality control
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 140
0
votes
0
replies
2.2k
views
Comment: Comment: Is it normal that my RNA degradation plot shows more degradation at the 3'-end?
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 140
1
vote
2
replies
2.2k
views
Is it normal that my RNA degradation plot shows more degradation at the 3'-end?
Bioconductor Affymetrix Microarray R
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 140
1
vote
1
reply
6.1k
views
Transcriptome Analysis Console (TAC) vs R Bioconductor
next-gen affymetrix microarray
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 140
7
votes
11
replies
11k
views
p-values for log fold change in RPKM
RPKM p-value RNA-Seq Normalization
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 140
3
votes
1
reply
1.6k
views
DNA loops with HiSeq
Hiseq Transcription-regulation
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 140
0
votes
1
reply
1.9k
views
TFBS in overlapping upstream regions in Bacteria
genomics sequence genome
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 140
2
votes
2
replies
2.4k
views
A database for TFBS in E. coli?
ChIP-Seq Genomics Transcription
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 140
0
votes
0
replies
2.8k
views
Parse RNA structure from Kinefold to RNA VIenna Package (RNAfold)
RNA structure Structure Prediction RNA Folding
11.0 years ago by Juan Cordero ▴ 140
0
votes
1
reply
11k
views
Comment: C: p-values for log fold change in RPKM
11.2 years ago by Juan Cordero ▴ 140
51 results • Page 1 of 2
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