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2.4k
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Comment: C: Insert size distribution for BWA
6.4 years ago by seta ★ 1.9k
0
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2
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2.4k
views
Comment: C: Insert size distribution for BWA
6.4 years ago by seta ★ 1.9k
0
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7
replies
2.4k
views
Insert size distribution for BWA
insert size BWA genome sequencing
6.4 years ago by seta ★ 1.9k
0
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0
replies
12k
views
Comment: C: Realign BAM files to other reference file
6.4 years ago by seta ★ 1.9k
0
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1
reply
12k
views
Comment: C: Realign BAM files to other reference file
6.4 years ago by seta ★ 1.9k
0
votes
2
replies
11k
views
Comment: C: Skip orientation as there are not enough pairs by bwa mem
6.4 years ago by seta ★ 1.9k
0
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1
reply
11k
views
Comment: C: Skip orientation as there are not enough pairs by bwa mem
updated 6.4 years ago by 35k • written 6.4 years ago by ★ 1.9k
0
votes
1
reply
11k
views
Comment: C: Skip orientation as there are not enough pairs by bwa mem
6.4 years ago by seta ★ 1.9k
0
votes
19
replies
11k
views
Skip orientation as there are not enough pairs by bwa mem
whole genome bwa paired end sequencing
6.4 years ago by seta ★ 1.9k
0
votes
2
replies
11k
views
Comment: C: Skip orientation as there are not enough pairs by bwa mem
6.4 years ago by seta ★ 1.9k
0
votes
0
replies
11k
views
Comment: C: Skip orientation as there are not enough pairs by bwa mem
6.4 years ago by seta ★ 1.9k
0
votes
1
reply
11k
views
Comment: C: Skip orientation as there are not enough pairs by bwa mem
6.4 years ago by seta ★ 1.9k
0
votes
1
reply
12k
views
Comment: C: Realign BAM files to other reference file
6.4 years ago by seta ★ 1.9k
1
vote
4
replies
1.8k
views
Getting Ensembl gene ID via biomart
gene Biomart ID Ensembl
updated 4.4 years ago by 45k • written 6.5 years ago by ★ 1.9k
0
votes
0
replies
2.0k
views
Comment: C: BWA alignment and very low properly paired
6.4 years ago by seta ★ 1.9k
1
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2
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2.0k
views
BWA alignment and very low properly paired
BWA alignment IGV
updated 6.4 years ago by 15k • written 6.4 years ago by ★ 1.9k
0
votes
1
reply
1.6k
views
Merging BAM file with Samtools
samtools merge BAM
updated 6.4 years ago by 105k • written 6.4 years ago by ★ 1.9k
0
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0
replies
3.3k
views
Comment: C: Keeping only common variants in the merged VCF file
6.5 years ago by seta ★ 1.9k
1
vote
3
replies
3.3k
views
Keeping only common variants in the merged VCF file
VCF merge bcftools
updated 6.5 years ago by ▴ 410 • written 6.5 years ago by ★ 1.9k
0
votes
0
replies
1.8k
views
Comment: C: Getting Ensembl gene ID via biomart
6.5 years ago by seta ★ 1.9k
0
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0
replies
1.8k
views
Comment: C: Getting Ensembl gene ID via biomart
6.5 years ago by seta ★ 1.9k
0
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0
replies
4.7k
views
Comment: C: HLA allele visualization in BAM file
6.5 years ago by seta ★ 1.9k
4
votes
0
replies
3.0k
views
Answer: C: Testing Illumina reads for contamination
6.5 years ago by seta ★ 1.9k
0
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1
reply
1.2k
views
Making random SNP with similar allele frequency and recombination rate to my SNP list
allele frequency random SNP population genetic
6.5 years ago by seta ★ 1.9k
0
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1
reply
4.7k
views
Comment: C: HLA allele visualization in BAM file
6.5 years ago by seta ★ 1.9k
0
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1
reply
4.7k
views
Comment: C: HLA allele visualization in BAM file
6.5 years ago by seta ★ 1.9k
0
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1
reply
4.7k
views
Comment: C: HLA allele visualization in BAM file
6.5 years ago by seta ★ 1.9k
0
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1
reply
4.7k
views
Comment: C: HLA allele visualization in BAM file
6.5 years ago by seta ★ 1.9k
0
votes
10
replies
4.7k
views
HLA allele visualization in BAM file
HLA genome sequencing visualization
updated 6.5 years ago by 89k • written 6.5 years ago by ★ 1.9k
0
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0
replies
5.5k
views
Answer: A: Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .
6.5 years ago by seta ★ 1.9k
0
votes
1
reply
1.8k
views
Comment: C: The content of variation (VEP) file from Ensembl
6.5 years ago by seta ★ 1.9k
0
votes
1
reply
1.8k
views
Comment: C: The content of variation (VEP) file from Ensembl
6.5 years ago by seta ★ 1.9k
3
votes
6
replies
1.8k
views
The content of variation (VEP) file from Ensembl
VEP human Ensembl
updated 6.5 years ago by 24k • written 6.5 years ago by ★ 1.9k
0
votes
0
replies
892
views
deltaDAF calculation to search positive selection signals
derived allele genomics positive selection
6.5 years ago by seta ★ 1.9k
20
votes
3
replies
9.7k
views
why A/T or C/G are ambiguous SNPs?
SNP variant strand genome
updated 6.6 years ago by 24k • written 6.6 years ago by ★ 1.9k
0
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0
replies
9.7k
views
Comment: A: why A/T or C/G are ambiguous SNPs?
6.6 years ago by seta ★ 1.9k
0
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0
replies
1.3k
views
DeltaDAF calculation between two populations
derived allele genetic population differentiation
6.6 years ago by seta ★ 1.9k
0
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1
reply
4.7k
views
Comment: C: How to check the allele strand of variants?
6.6 years ago by seta ★ 1.9k
7
votes
6
replies
4.7k
views
How to check the allele strand of variants?
variant
updated 3.4 years ago by • 0 • written 6.6 years ago by ★ 1.9k
0
votes
1
reply
2.6k
views
Comment: C: DE analysis with edgeR and possibly batch effect
6.6 years ago by seta ★ 1.9k
3
votes
5
replies
2.6k
views
DE analysis with edgeR and possibly batch effect
analysis edgeR batch-effect DE
updated 18 months ago by 45k • written 6.6 years ago by ★ 1.9k
7
votes
6
replies
3.8k
views
VEP output and stop gain mutation
VEP stop gain ensembl
updated 6.7 years ago by 12k • written 7.0 years ago by ★ 1.9k
0
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0
replies
2.6k
views
Plotting Fst or zFst value
Fst Manhattan plot z-score
6.7 years ago by seta ★ 1.9k
0
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0
replies
1.4k
views
How to get derived allele count for a list of SNPs
derived allele population vcf
6.7 years ago by seta ★ 1.9k
0
votes
1
reply
6.4k
views
How vcftools calculate Fst value?
Fst vcftools populations
6.7 years ago by seta ★ 1.9k
0
votes
0
replies
5.8k
views
Comment: C: Replace ID column of vcf file with another column in the text file
6.7 years ago by seta ★ 1.9k
2
votes
5
replies
5.8k
views
Replace ID column of vcf file with another column in the text file
vcf ID column edit manipulation
6.7 years ago by seta ★ 1.9k
5
votes
5
replies
10k
views
How to map and visualize differentially expressed genes on KEGG pathways
differentially expressed gene KEGG pathway
updated 6.7 years ago by ▴ 10 • written 9.4 years ago by ★ 1.9k
1
vote
0
replies
2.9k
views
Comment: C: Quality control on 1000 genome vcf file
6.8 years ago by seta ★ 1.9k
2
votes
2
replies
2.9k
views
Quality control on 1000 genome vcf file
quality control 1000 genome vcf
updated 6.8 years ago by 89k • written 6.8 years ago by ★ 1.9k
868 results • Page 6 of 18
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