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0
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0
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6.8k
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Comment: Comment: flagstats results show 0.0 % properly paired reads
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 410
0
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3
replies
8.2k
views
Plotting Venn diagram for multiple BED files
ngs Venn diagram
updated 6.1 years ago by 20 • written 8.6 years ago by ▴ 410
7
votes
16
replies
7.1k
views
Switch the position of REF/ALT alleles based on AA (ancestral allele) annotations in VCF
vcf ngs
updated 6.1 years ago by ▴ 30 • written 8.1 years ago by ▴ 410
0
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1
reply
2.6k
views
Comment: C: Plotting F3 statistics values on world map
6.8 years ago by SOHAIL ▴ 410
0
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6
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2.6k
views
Plotting F3 statistics values on world map
R ngs
6.8 years ago by SOHAIL ▴ 410
0
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1
reply
2.6k
views
Comment: C: Plotting F3 statistics values on world map
6.8 years ago by SOHAIL ▴ 410
0
votes
1
reply
6.1k
views
Comment: C: reference genome hs37d5 with PhiX
6.8 years ago by SOHAIL ▴ 410
8
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11
replies
6.1k
views
reference genome hs37d5 with PhiX
reference genome ngs
updated 3.2 years ago by 153k • written 7.0 years ago by ▴ 410
0
votes
1
reply
1.7k
views
Select the transversions only from SNP data set
ngs plink
6.9 years ago by SOHAIL ▴ 410
0
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1
reply
6.1k
views
Comment: C: reference genome hs37d5 with PhiX
7.0 years ago by SOHAIL ▴ 410
0
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1
reply
6.1k
views
Comment: C: reference genome hs37d5 with PhiX
7.0 years ago by SOHAIL ▴ 410
1
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1
reply
6.1k
views
Comment: C: reference genome hs37d5 with PhiX
7.0 years ago by SOHAIL ▴ 410
0
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0
replies
3.7k
views
Comment: C: Remove ambiguous calls in the VCF file
7.0 years ago by SOHAIL ▴ 410
0
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1
reply
3.7k
views
Comment: C: Remove ambiguous calls in the VCF file
updated 7.0 years ago by 16k • written 7.0 years ago by ▴ 410
0
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4
replies
3.7k
views
Remove ambiguous calls in the VCF file
VCF
updated 7.0 years ago by 89k • written 7.0 years ago by ▴ 410
0
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1
reply
5.9k
views
Comment: C: Genotyping with samtools/bcftools
7.2 years ago by SOHAIL ▴ 410
2
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3
replies
5.9k
views
Genotyping with samtools/bcftools
samtools bcftools ngs
updated 7.2 years ago by 89k • written 7.2 years ago by ▴ 410
9
votes
3
replies
3.8k
views
Optimizing Java Jar's parameters while processing large high throughput sequencing data
ngs java
updated 7.2 years ago by 20 • written 9.2 years ago by ▴ 410
0
votes
1
reply
3.7k
views
Calculate the genotype frequency
ngs vcf
updated 7.4 years ago by ▴ 240 • written 7.4 years ago by ▴ 410
11
votes
4
replies
13k
views
Haplotype Phasing with Shapeit2
ngs
updated 7.5 years ago by • 0 • written 9.1 years ago by ▴ 410
5
votes
8
replies
6.8k
views
6 follow
flagstats results show 0.0 % properly paired reads
next-gen alignment
updated 2.1 years ago by ▴ 20 • written 10.2 years ago by ▴ 410
2
votes
1
reply
6.8k
views
Answer: A: flagstats results show 0.0 % properly paired reads
7.6 years ago by SOHAIL ▴ 410
0
votes
1
reply
3.7k
views
tools for Population branch statistics (PBS)
selection scans ngs
updated 7.6 years ago by ▴ 680 • written 8.0 years ago by ▴ 410
1
vote
1
reply
12k
views
Comment: C: calculate Per variant Heterozygosity from VCF file
7.7 years ago by SOHAIL ▴ 410
20
votes
10
replies
12k
views
calculate Per variant Heterozygosity from VCF file
ngs vcf
updated 7.7 years ago by 89k • written 7.7 years ago by ▴ 410
3
votes
3
replies
5.5k
views
How to get adapter information from SRA dump FASTQ file??
next-gen
updated 8.0 years ago by 20k • written 9.3 years ago by ▴ 410
0
votes
0
replies
7.1k
views
Comment: C: Switch the position of REF/ALT alleles based on AA (ancestral allele) annotation
8.1 years ago by SOHAIL ▴ 410
0
votes
1
reply
7.1k
views
Comment: C: Switch the position of REF/ALT alleles based on AA (ancestral allele) annotation
8.1 years ago by SOHAIL ▴ 410
0
votes
0
replies
7.1k
views
Comment: C: Switch the position of REF/ALT alleles based on AA (ancestral allele) annotation
8.1 years ago by SOHAIL ▴ 410
5
votes
1
reply
5.0k
views
About Accessible Genome Mask
ngs 1000 genomes
updated 8.3 years ago by ▴ 50 • written 8.9 years ago by ▴ 410
0
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0
replies
2.6k
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PSMC analysis: input data processing, mutation rate, generation time
psmc
8.5 years ago by SOHAIL ▴ 410
0
votes
0
replies
14k
views
Comment: C: Generate Consensus sequence from BAM file
8.6 years ago by SOHAIL ▴ 410
0
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1
reply
14k
views
Answer: A: Generate Consensus sequence from BAM file
8.6 years ago by SOHAIL ▴ 410
3
votes
7
replies
14k
views
Generate Consensus sequence from BAM file
samtools mpileup psmc
8.6 years ago by SOHAIL ▴ 410
0
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0
replies
14k
views
Comment: C: Generate Consensus sequence from BAM file
8.6 years ago by SOHAIL ▴ 410
3
votes
3
replies
2.3k
views
comparing coordinates between two files
linux ngs
updated 8.7 years ago by 36k • written 8.7 years ago by ▴ 410
2
votes
1
reply
2.3k
views
Comment: C: comparing coordinates between two files
8.7 years ago by SOHAIL ▴ 410
0
votes
1
reply
6.6k
views
Comment: C: P-Value calculation from iHS and XP-EHH scores
8.7 years ago by SOHAIL ▴ 410
7
votes
4
replies
6.6k
views
P-Value calculation from iHS and XP-EHH scores
selection selscan ngs statistics R
updated 3.3 years ago by ▴ 20 • written 8.7 years ago by ▴ 410
1
vote
0
replies
4.0k
views
Comment: C: How to find variants that are common in one population but rare in others (popul
8.7 years ago by SOHAIL ▴ 410
0
votes
1
reply
4.0k
views
Comment: C: How to find variants that are common in one population but rare in others (popul
8.7 years ago by SOHAIL ▴ 410
6
votes
6
replies
4.0k
views
How to find variants that are common in one population but rare in others (population differentiation)?
SNP wgs variant filtration population genomics
8.7 years ago by SOHAIL ▴ 410
1
vote
0
replies
16k
views
Comment: C: How To Perform A Fst (Fixation Index) Calculation Over A Vcf File Using A Slidin
8.7 years ago by SOHAIL ▴ 410
0
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0
replies
12k
views
Comment: C: Principal Component Analysis using SNP data ste
8.9 years ago by SOHAIL ▴ 410
14
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4
replies
12k
views
Principal Component Analysis using SNP data ste
ngs PCA analysis
updated 8.9 years ago by 24k • written 8.9 years ago by ▴ 410
0
votes
3
replies
2.8k
views
How to combine variants??
ngs variant manioulation
updated 8.9 years ago by 48k • written 8.9 years ago by ▴ 410
0
votes
0
replies
2.8k
views
Comment: C: How to combine variants??
8.9 years ago by SOHAIL ▴ 410
1
vote
0
replies
4.2k
views
Comment: C: Determine the percentage of the human genome covered by the BED interval file
8.9 years ago by SOHAIL ▴ 410
0
votes
0
replies
4.2k
views
Comment: C: Determine the percentage of the human genome covered by the BED interval file
8.9 years ago by SOHAIL ▴ 410
6
votes
7
replies
4.2k
views
Determine the percentage of the human genome covered by the BED interval file
ngs genome
updated 8.9 years ago by 5.9k • written 8.9 years ago by ▴ 410
71 results • Page 1 of 2
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