Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
all
0
votes
1
reply
5.6k
views
Comment:
C: What is the appropriate assembler for PacBio long reads
6.4 years ago by
bioinforesearchquestions
▴ 370
7
votes
7
replies
5.6k
views
What is the appropriate assembler for PacBio long reads
Assembly
alignment
updated 6.4 years ago by
gconcepcion
▴ 410 • written 6.4 years ago by
bioinforesearchquestions
▴ 370
1
vote
2
replies
2.2k
views
Are there any tools for comparing structural variants between different callers?
Structural variants
SV
6.5 years ago by
bioinforesearchquestions
▴ 370
5
votes
2
replies
1.4k
views
How to align the sanger sequenced fragments against human reference gene?
DNAseq
sanger
align
alignment
updated 6.5 years ago by
WouterDeCoster
47k • written 6.5 years ago by
bioinforesearchquestions
▴ 370
0
votes
2
replies
1.8k
views
While generating the % of mapped reads to all miRNAs, do I need to consider unique or multi-match reads?
miRNA
mirdeep2
RNAseq
6.7 years ago by
bioinforesearchquestions
▴ 370
0
votes
2
replies
1.9k
views
Need help in selecting the correct output file from miRDeep2?
miRNA
miRDeep2
miRBase
RNA-Seq
6.7 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
1.9k
views
Comment:
C: Need help in selecting the correct output file from miRDeep2?
6.7 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
3.6k
views
Comment:
C: How to anntate small-RNA seq reads distribution
6.7 years ago by
bioinforesearchquestions
▴ 370
1
vote
1
reply
2.4k
views
how to annotate (rRNA, tRNA, Mt_rRNA, Mt_tRNA, etc) sequenced small RNA reads
rna-seq
small RNA
annotation
6.7 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
2.1k
views
Comment:
C: What are the methods to downsample the Depth of coverage (ex: 50X -> 25X)?
6.7 years ago by
bioinforesearchquestions
▴ 370
0
votes
2
replies
2.1k
views
What are the methods to downsample the Depth of coverage (ex: 50X -> 25X)?
BAM
downsample
depth
wig
6.7 years ago by
bioinforesearchquestions
▴ 370
5
votes
5
replies
5.8k
views
How to visualize large VCF files
VCF
variant calling
SNPS
SNP
variant
updated 6.7 years ago by
Biostar
20 • written 8.6 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
3.6k
views
Comment:
C: How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
6.8 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
1.7k
views
Comment:
C: Need tools recommendation for plant RNAseq data
6.8 years ago by
bioinforesearchquestions
▴ 370
1
vote
3
replies
1.7k
views
Need tools recommendation for plant RNAseq data
RNA-Seq
plants
Assembly
variant calling
updated 6.8 years ago by
apeltzer
▴ 150 • written 6.8 years ago by
bioinforesearchquestions
▴ 370
2
votes
1
reply
1.2k
views
Is it possible to check whether a sample is progeny of the other two samples from exome sequenced data?
SNP
exome
NGS
DNA-SEQ
updated 6.8 years ago by
Noushin N
▴ 600 • written 6.8 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
4.7k
views
Comment:
C: How to validate the SNP calling pipeline?
6.8 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
4.7k
views
Comment:
C: How to validate the SNP calling pipeline?
6.8 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
4.7k
views
Comment:
C: How to validate the SNP calling pipeline?
6.8 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
4.7k
views
Comment:
C: How to validate the SNP calling pipeline?
6.8 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
4.7k
views
Comment:
C: How to validate the SNP calling pipeline?
6.8 years ago by
bioinforesearchquestions
▴ 370
10
votes
14
replies
4.7k
views
6 follow
How to validate the SNP calling pipeline?
DNASeq
variant calling
SNP
updated 6.9 years ago by
Kevin Blighe
88k • written 6.9 years ago by
bioinforesearchquestions
▴ 370
1
vote
13
replies
2.9k
views
How to generate FASTA sequence of genes and phylogenetic analysis from NGS sequenced reads?
DNAseq
FASTA
Phylogenetic analysis
NGS
updated 6.9 years ago by
Biostar
20 • written 6.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.9k
views
Comment:
C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
6.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.9k
views
Comment:
C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
6.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.9k
views
Comment:
C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
6.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
4.3k
views
Comment:
C: Do I need to provide the Illumina's target region bed file for qualimap?
6.9 years ago by
bioinforesearchquestions
▴ 370
2
votes
5
replies
4.3k
views
Do I need to provide the Illumina's target region bed file for qualimap?
dnaseq
coverage
depth
exome sequencing
WES
updated 6.9 years ago by
Raony GuimarĂ£es
★ 1.4k • written 7.1 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.9k
views
Comment:
C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
6.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
3.6k
views
Comment:
C: identification of viral gene from fastq or BAM file
6.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.9k
views
Comment:
C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
6.9 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.9k
views
Comment:
C: How to generate FASTA sequence of genes and phylogenetic analysis from NGS seque
6.9 years ago by
bioinforesearchquestions
▴ 370
2
votes
1
reply
3.8k
views
Which read counts file from miRDeep2 should be considered for differential expression analysis?
miRNA
miRDeep2
miRBase
RNA-Seq
updated 7.0 years ago by
h.mon
35k • written 7.1 years ago by
bioinforesearchquestions
▴ 370
4
votes
7
replies
2.3k
views
What kind of filtering can be applied to reduce my exonic variants?
Exomeseq
SNP
DNAseq
Trio
Variants
updated 7.0 years ago by
Biostar
20 • written 7.7 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
1.8k
views
Looking for WIG base coverage file for hg19 to call CNVs in Exome data using EXCAVATOR
CNV
Exome
EXCAVATOR
WIG
hg19
7.1 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
3.2k
views
Comment:
C: uniqueome mappability file for EXCAVATOR-tool
7.1 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
2.6k
views
Comment:
C: Looking for wig base coverage file for hg19
7.1 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
2.1k
views
Comment:
C: Can I merge the exome interval lists from two different kits for identifying CNV
7.1 years ago by
bioinforesearchquestions
▴ 370
1
vote
2
replies
2.1k
views
Can I merge the exome interval lists from two different kits for identifying CNVs using XHMM?
CNVs
BED
Exome
XHMM
Intervals
updated 7.1 years ago by
Sean Davis
27k • written 7.1 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
4.4k
views
Answer:
A: Read Counts from miRDeep2 for posterior DE analysis
7.1 years ago by
bioinforesearchquestions
▴ 370
1
vote
0
replies
2.9k
views
Comment:
C: Help required for Bacterial RNAseq data
7.1 years ago by
bioinforesearchquestions
▴ 370
0
votes
2
replies
3.3k
views
Comment:
C: How come the QC-passed reads from samtools flagstat is different from FASTQ (R1+
7.2 years ago by
bioinforesearchquestions
▴ 370
8
votes
6
replies
3.3k
views
How come the QC-passed reads from samtools flagstat is different from FASTQ (R1+R2) read count?
samtools
sam
bam
alignment
updated 7.2 years ago by
lakhujanivijay
5.9k • written 7.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
3.2k
views
Comment:
C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
1
reply
3.2k
views
Comment:
C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
2
replies
3.2k
views
Comment:
C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
0
replies
3.2k
views
Comment:
C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by
bioinforesearchquestions
▴ 370
1
vote
0
replies
3.2k
views
Comment:
C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by
bioinforesearchquestions
▴ 370
0
votes
2
replies
3.2k
views
Comment:
C: What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) fr
7.2 years ago by
bioinforesearchquestions
▴ 370
6
votes
13
replies
3.2k
views
What is the difference between log2(Mutant/Wildtype) or log2(Wildtype/Mutant) from cuffdiff output?
RNA-SEQ
heatmap
cuffdiff
updated 7.2 years ago by
Renesh
★ 2.2k • written 7.2 years ago by
bioinforesearchquestions
▴ 370
285 results • Page
3 of 6
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6