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7
votes
9
replies
5.7k
views
Merge contigs in fasta file
fasta merge contigs
updated 2.7 years ago by ▴ 10 • written 5.0 years ago by ▴ 350
4
votes
4
replies
902
views
Variation in proportion of methylated CpGs between human cell types
methylation cpgs genome epigenetics cell
updated 3.8 years ago by ▴ 180 • written 3.8 years ago by ▴ 350
0
votes
0
replies
837
views
Make a bed file to exclude 1Mb from start and end of contigs
genome filter bed mask
updated 4.0 years ago by 20 • written 4.1 years ago by ▴ 350
2
votes
5
replies
1.7k
views
How to create a bed file from a fasta containing all regions with clusters of >= 50 Ns and flanking 1kb regions
genome filtering bed fasta
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 350
4
votes
6
replies
1.2k
views
Find mutations that are spatially clustered?
genome variants clustering GRanges
updated 4.1 years ago by ★ 3.4k • written 4.1 years ago by ▴ 350
1
vote
3
replies
7.2k
views
Plotting chromosomal data from sliding window analyses
visualisation plotting ngs R genome
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 350
3
votes
2
replies
2.2k
views
How to generate rainfall plots when using multiple different species assemblies
genomics visualization fasta snps
updated 4.2 years ago by ★ 3.4k • written 4.2 years ago by ▴ 350
1
vote
2
replies
1.3k
views
Calculating effective coverage/callable genome for variant calling from a bam file
genome bam bigwig coverage variant-calling
updated 4.8 years ago by 161k • written 4.8 years ago by ▴ 350
3
votes
2
replies
1.8k
views
Modify reference fasta using bed file
fasta bed genome
updated 4.8 years ago by ★ 2.2k • written 4.8 years ago by ▴ 350
5
votes
2
replies
948
views
How to find total size of regions NOT in bigWig file
fasta bed genome
updated 5.0 years ago by 82k • written 5.0 years ago by ▴ 350
4
votes
11
replies
3.4k
views
VCF input for KaryotypeR
R
updated 5.6 years ago by 5.3k • written 5.6 years ago by ▴ 350
1
vote
1
reply
1.4k
views
Calculate Mean absolute allele frequency difference from MS output
ms simulations allele frequency
6.2 years ago by Rubal ▴ 350
2
votes
2
replies
1.7k
views
Are there tools to visually model/simulate the spread of a mutant cell population in 2D?
simulations cells
updated 7.6 years ago by 27k • written 7.6 years ago by ▴ 350
3
votes
11
replies
6.5k
views
Calculating statistical significance of overlap between two groups of genes - adapting hypergeometric test for my situation?
r genome genes overlap significance
updated 7.7 years ago by 11k • written 7.7 years ago by ▴ 350
2
votes
5
replies
3.6k
views
How to get per sample read depth from VCF with no DP field
vcf coverage depth
updated 7.9 years ago by ★ 2.5k • written 7.9 years ago by ▴ 350
2
votes
5
replies
2.7k
views
Identifying which allele is derived in non-human species
BioMart ancestral SNPs derived Ensembl
updated 21 months ago by 43k • written 8.3 years ago by ▴ 350
2
votes
1
reply
2.9k
views
Calculating Fst from simulations
Fst Simulations Coalescent Population genetics
8.6 years ago by Rubal ▴ 350
4
votes
6
replies
2.4k
views
Generate heatmap or table showing genes found in multiple tests
overlap heatmap venn comparative-genomics
updated 19 months ago by 43k • written 8.7 years ago by ▴ 350
0
votes
0
replies
1.7k
views
Best way to compare rate of amino acid change between proteins?
evolution genome protein phylogenetics
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 350
3
votes
2
replies
2.7k
views
Are GWAS biased by variation in haplotype size?
snp GWAS genome haplotype
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 350
0
votes
0
replies
2.2k
views
How to compare the rate of sequence or amino acid evolution between a set of genes?
alignment genome gene sequence
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 350
7
votes
4
replies
5.7k
views
Linkage information from unphased VCF files
next-gen vcf genome
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 350
5
votes
2
replies
4.6k
views
Overlap between 2 sets of genomic regions of differing size
genome sequence windows next-gen
updated 2.6 years ago by 43k • written 9.9 years ago by ▴ 350
10
votes
3
replies
9.1k
views
Summarising Whole Genome Allele Frequency Spectrum from VCF file
allele-frequency vcf pop-gen genome
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 350
2
votes
6
replies
4.5k
views
Interpreting XPEHH output
selection snps haplotype xpehh genome
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 350
3
votes
7
replies
3.7k
views
How To Identify Substitutions Between Populations In A Vcf
vcf population genome allele
updated 12.2 years ago by 161k • written 12.2 years ago by ▴ 350
4
votes
2
replies
4.4k
views
Where To Find A Good Estimate Of The Background Mutation Rate In Rattus Norvegicus
mutation recombination genome
updated 12.2 years ago by ▴ 620 • written 12.2 years ago by ▴ 350
11
votes
33
replies
4.0k
views
Detect Regions In A List That Are Within 1 Megabase Of Each Other
python snp genomics overlap
updated 12.6 years ago by 54k • written 12.6 years ago by ▴ 350
1
vote
6
replies
2.3k
views
How Can I Divide Snp Data Into Fixed Windows Based On Physical Distance ?
snp python
updated 12.6 years ago by 24k • written 12.6 years ago by ▴ 350
29 results • Page 1 of 1
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