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2
votes
2
replies
399
views
Need a spatial transcriptomics cancer data
NGS scRNA-Seq Single-Cell
updated 11 weeks ago by ★ 1.8k • written 12 weeks ago by ▴ 800
9
votes
2
replies
517
views
Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq scrna-seq deg deseq2
updated 5 months ago by 4.2k • written 5 months ago by ▴ 800
2
votes
6
replies
861
views
What are the steps for Germline and Somatic CNV detection using CNVkit?
cnv cnvkit
updated 3 months ago by 43k • written 5 months ago by ▴ 800
0
votes
1
reply
491
views
How to add annotation columns with specific colors to the heatmap?
R heatmap RNA-seq
updated 10 months ago by 43k • written 10 months ago by ▴ 800
1
vote
1
reply
487
views
Barcode whitelist in seurat
scRNA ngs scRNA-seq
updated 23 months ago by 21k • written 23 months ago by ▴ 800
0
votes
2
replies
749
views
How to demultiplex single cell rna-seq based on SNP mutation?
NGS RNA-SEQ singlecell scRNA-seq
23 months ago by ahmad mousavi ▴ 800
4
votes
3
replies
5.4k
views
How to compare two Seurat object (sample) in order to find top markers?
scRNA-SEQ NGS rna-seq
updated 2.4 years ago by ▴ 100 • written 2.5 years ago by ▴ 800
0
votes
2
replies
1.1k
views
Finding cluster specific markers in the Seurat object
sequencing seurat scRNA scRNA-SEQ
2.5 years ago by ahmad mousavi ▴ 800
5
votes
4
replies
6.2k
views
Which trajectory method is better !?
cell monocle3 monocle scRNA-SEQ single RNA-SEQ
2.6 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
587
views
How to merge Bulk ATAC-SEQ with scATAC-SEQ result?
atac scATAC
2.7 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
1.1k
views
Remove cells from Seurat object based on gene expression of makers
rnaseq singlecell seurat scrna
3.0 years ago by ahmad mousavi ▴ 800
1
vote
1
reply
862
views
Rare cell population in single cell ATAC-Seq
atac-seq atac
updated 3.0 years ago by ▴ 110 • written 3.0 years ago by ▴ 800
0
votes
0
replies
1.2k
views
No peaks found in Signac's FindMarker
seurat atac-seq Signac atac singlecell
3.1 years ago by ahmad mousavi ▴ 800
0
votes
3
replies
2.9k
views
How to handle DNA methylation duplication in Bismark?
sequencing alignment
updated 3.7 years ago by 20 • written 6.4 years ago by ▴ 800
1
vote
5
replies
2.1k
views
How to make annotation (GFF/GTF) for transcriptome?
RNA-Seq Assembly sequencing alignment
updated 3.9 years ago by 8.6k • written 3.9 years ago by ▴ 800
0
votes
1
reply
484
views
How to make comparison between human and mouse pathways for a gene list?
RNA-Seq
4.0 years ago by ahmad mousavi ▴ 800
3
votes
4
replies
3.3k
views
How to make GFF file based on assembled transcriptome and genome sequence?
RNA-Seq Assembly ChIP-Seq sequencing
updated 4.1 years ago by 35k • written 4.1 years ago by ▴ 800
6
votes
7
replies
5.7k
views
6 follow
What are the best tools for visualizing DNA methylation result?
rrbs methylation RNA-Seq
updated 18 months ago by • 0 • written 5.9 years ago by ▴ 800
2
votes
2
replies
1.9k
views
What is the best pipeline for analyzing Non-invasive prenatal (NIPT) data?
genome next-gen alignment
updated 5.1 years ago by ▴ 10 • written 5.4 years ago by ▴ 800
8
votes
5
replies
4.0k
views
How to do DMR analysis with BiSeq (for RRBS methylation data)?
sequencing DMR methylation
updated 5.2 years ago by 8.2k • written 6.3 years ago by ▴ 800
5
votes
2
replies
3.3k
views
How to merge microarray and RNA-SEQ expression data for DEG analysis?
RNA-Seq microarray expression
updated 5.3 years ago by 87k • written 5.4 years ago by ▴ 800
0
votes
1
reply
837
views
How much data and how many libraries do we need for de-novo assembly?
Assembly sequencing genome next-gen
updated 5.4 years ago by ★ 3.2k • written 5.4 years ago by ▴ 800
6
votes
14
replies
4.8k
views
Too many contig after genome assembly with Spades
assembly genome sequence
5.5 years ago by ahmad mousavi ▴ 800
3
votes
5
replies
4.5k
views
Converting Blast output to GFF
Assembly genome blast
updated 3.1 years ago by • 0 • written 5.5 years ago by ▴ 800
1
vote
5
replies
4.2k
views
How to do feature selection using PCA?
RNA-Seq R pca
5.5 years ago by ahmad mousavi ▴ 800
1
vote
4
replies
2.3k
views
How to make cluster from gene read count?
RNA-Seq clustering R deseq2 edgeR
updated 5.5 years ago by ★ 2.0k • written 5.6 years ago by ▴ 800
25
votes
19
replies
12k
views
8 follow
How to make k-means clustering plot for relative expression?
RNA-Seq R deseq2
updated 5.5 years ago by ★ 2.0k • written 5.6 years ago by ▴ 800
7
votes
5
replies
6.3k
views
How to add stats. to volcano plot?
RNA-Seq R ggplot2 plot
5.6 years ago by ahmad mousavi ▴ 800
3
votes
4
replies
2.5k
views
How to interepret DNA methylation by DSS package?
RRBS wgbs
updated 5.9 years ago by 104k • written 5.9 years ago by ▴ 800
0
votes
3
replies
2.2k
views
Problem with annovar in GATK4 output
exome gatk4 annovar
6.2 years ago by ahmad mousavi ▴ 800
3
votes
2
replies
5.7k
views
Using gVCF mode in HaplotypeCaller ( GATK4)
gatk4 SNP HaplotypeCaller
updated 6.2 years ago by ▴ 680 • written 6.2 years ago by ▴ 800
3
votes
5
replies
5.0k
views
Problem with methylKit and Bismark
next-gen epigenetic
updated 6.3 years ago by • 0 • written 6.4 years ago by ▴ 800
0
votes
0
replies
2.2k
views
Error in methylKit in DMR analysis
RRBS WGBS
6.3 years ago by ahmad mousavi ▴ 800
1
vote
2
replies
1.1k
views
How to distinguish level of expression in pooled-like samples?
RNA-Seq next-gen alignment
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 800
0
votes
5
replies
3.1k
views
tophat2 "Broken pipe error"
RNA-Seq NGS
6.6 years ago by ahmad mousavi ▴ 800
35 results • Page 1 of 1
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