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31
votes
11
replies
6.2k
views
8 follow
Basics Of Systems Biology...
network
updated 11 weeks ago by • 0 • written 13.1 years ago by ★ 1.5k
2
votes
1
reply
425
views
Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for diagnostic purpose
nanopore
updated 6 months ago by 5.5k • written 6 months ago by ★ 1.5k
8
votes
4
replies
643
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 7 months ago by 21k • written 7 months ago by ★ 1.5k
0
votes
1
reply
328
views
Trimming SSR (repetitive primer) sequences
genomics
updated 10 months ago by 134k • written 10 months ago by ★ 1.5k
0
votes
3
replies
470
views
Calculate distribution of reads over the reference genome
ngs
updated 11 months ago by 21k • written 11 months ago by ★ 1.5k
1
vote
2
replies
448
views
Identifying reliable regions of reference genomes
snp genomics
updated 13 months ago by ★ 1.4k • written 13 months ago by ★ 1.5k
0
votes
1
reply
424
views
Comment: Comment: Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
14 months ago by pixie@bioinfo ★ 1.5k
0
votes
3
replies
424
views
Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
Illumina mini-seq
updated 14 months ago by 134k • written 14 months ago by ★ 1.5k
0
votes
0
replies
496
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 9 months ago by 40k • written 15 months ago by ★ 1.5k
0
votes
0
replies
242
views
pysam fetch alignments corresponding to a taxid
pysam samtools
16 months ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
410
views
Comment: Comment: How to calculate p-value for Network Data (Cluster Detection)
17 months ago by pixie@bioinfo ★ 1.5k
0
votes
2
replies
410
views
How to calculate p-value for Network Data (Cluster Detection)
network correlation
17 months ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
285
views
Diagnostic Plots for SNP quality assesment
vcf
19 months ago by pixie@bioinfo ★ 1.5k
2
votes
1
reply
426
views
VCF file, calculate depth per sample
vcf bcftools
updated 19 months ago by ▴ 460 • written 19 months ago by ★ 1.5k
0
votes
1
reply
442
views
Comment: Comment: Identify predicted TF targets by binding motif
19 months ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
536
views
Problem with VCF format while using "VariantAnnotation" R package
vcf
updated 19 months ago by ★ 1.3k • written 19 months ago by ★ 1.5k
8
votes
11
replies
6.2k
views
6 follow
Heatmap In R-Wgcna-->Error While Plotting Tom
r heatmap
updated 20 months ago by • 0 • written 10.2 years ago by ★ 1.5k
0
votes
0
replies
323
views
Information about Genotyping by Sequencing (GBS)
snp
updated 22 months ago by 134k • written 22 months ago by ★ 1.5k
0
votes
0
replies
468
views
Create combined CpG and non-CpG bedgraphs for DNA methylation using Bismark
methylation
2.0 years ago by pixie@bioinfo ★ 1.5k
2
votes
2
replies
599
views
R programming: basics to challenging
R
updated 2.2 years ago by 76k • written 2.2 years ago by ★ 1.5k
0
votes
1
reply
1.2k
views
Plots for Correlation between two dataframes by row
R
updated 2.3 years ago by 86k • written 2.3 years ago by ★ 1.5k
0
votes
2
replies
507
views
Ideas to represent RNA-seq expression profile (Z-scores) and the significance level at the same time
R RNAseq
updated 2.3 years ago by ★ 2.9k • written 2.3 years ago by ★ 1.5k
2
votes
9
replies
21k
views
7 follow
HISAT error: Encountered internal HISAT2 exception (#1)
RNA-Seq
updated 2.4 years ago by • 0 • written 6.3 years ago by ★ 1.5k
0
votes
1
reply
852
views
Segmentation fault with HOMER
homer HiC
updated 20 months ago by • 0 • written 2.5 years ago by ★ 1.5k
1
vote
3
replies
2.0k
views
Forum: MOOC for AI and Machine learning for Bioinformatics
ML AI
updated 6 months ago by 40k • written 3.1 years ago by ★ 1.5k
0
votes
1
reply
443
views
P value for test for proportions and random sampling
R
2.7 years ago by pixie@bioinfo ★ 1.5k
2
votes
0
replies
1.1k
views
Answer: A: Self Organizing Maps for RNA-seq data
updated 2.8 years ago by 134k • written 2.8 years ago by ★ 1.5k
4
votes
3
replies
1.1k
views
Self Organizing Maps for RNA-seq data
RNA-Seq
2.8 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.1k
views
Comment: C: Self Organizing Maps for RNA-seq data
2.8 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.3k
views
Comment: C: Using Deeptool for profile plots
2.8 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
1.3k
views
Comment: C: Using Deeptool for profile plots
2.8 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.3k
views
Comment: C: Using Deeptool for profile plots
2.8 years ago by pixie@bioinfo ★ 1.5k
2
votes
5
replies
1.3k
views
Using Deeptool for profile plots
deeptools
2.8 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
617
views
Issue with Diffreps
ChIP-Seq
2.8 years ago by pixie@bioinfo ★ 1.5k
4
votes
2
replies
2.1k
views
Bismark: bedgraph to bigwig for DNA methylation
methylation
updated 2.9 years ago by ▴ 20 • written 3.0 years ago by ★ 1.5k
0
votes
0
replies
519
views
Ideas Regarding TF regulatory network
network
2.9 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
1.4k
views
CUT&RUN analysis pipeline
alignment sequencing
updated 2.9 years ago by 12k • written 2.9 years ago by ★ 1.5k
1
vote
1
reply
608
views
Bedtools to make a bed file for promoter
bedtools
updated 2.9 years ago by 11k • written 2.9 years ago by ★ 1.5k
1
vote
1
reply
944
views
DMR detection tools for whole genome bisulphite sequencing data in Plants
R
updated 3.0 years ago by ▴ 370 • written 3.0 years ago by ★ 1.5k
7
votes
6
replies
1.4k
views
Plant orthologous genes
gene
updated 3.1 years ago by 14k • written 3.1 years ago by ★ 1.5k
11
votes
4
replies
15k
views
Importing Network From Wgcna Into Cytoscape
cytoscape network
updated 19 months ago by ▴ 30 • written 10.7 years ago by ★ 1.5k
0
votes
0
replies
1000
views
Comment: C: p value for permutation test for gene-interaction data
3.2 years ago by pixie@bioinfo ★ 1.5k
1
vote
3
replies
1000
views
p value for permutation test for gene-interaction data
statistics
updated 3.2 years ago by 10k • written 3.2 years ago by ★ 1.5k
0
votes
0
replies
2.5k
views
Answer: A: How to combine two networks
3.3 years ago by pixie@bioinfo ★ 1.5k
3
votes
7
replies
3.0k
views
Statistical test for overlap
statistics
updated 3.3 years ago by ▴ 990 • written 3.3 years ago by ★ 1.5k
0
votes
0
replies
1.5k
views
Comment: C: Boxplots from ChIP-seq Data
3.5 years ago by pixie@bioinfo ★ 1.5k
3
votes
2
replies
1.5k
views
Boxplots from ChIP-seq Data
ChIP-Seq
updated 3.5 years ago by 8.8k • written 3.5 years ago by ★ 1.5k
0
votes
1
reply
755
views
Heatmap using Interaction/HiCHip data
ngs heatmap
3.6 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
799
views
Job: Post-Doctoral position (Bioinformatics) in the Chromosome Dynamics team at the Institut des Sciences des Plantes - Paris-Saclay (IPS2)
R next-gen ChIP-Seq
updated 3 months ago by 40k • written 3.6 years ago by ★ 1.5k
0
votes
1
reply
730
views
Finding over and under-represented interactions using HOMER
homer hic
3.7 years ago by pixie@bioinfo ★ 1.5k
246 results • Page 1 of 5
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