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1
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489
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Where to find terra (telomeric RNA) coordinates?
rnaseq Alignment mapping
updated 22 months ago by 28k • written 22 months ago by ▴ 130
0
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0
replies
743
views
Comment: Comment: How to integrate multi omics data in cytoscape
22 months ago by PK ▴ 130
1
vote
2
replies
743
views
How to integrate multi omics data in cytoscape
cytoscape protein-protein interaction network
22 months ago by PK ▴ 130
2
votes
1
reply
508
views
Is it possible to find the mutation in RNA-seq reads?
RNA-seq mapping clip-seq
updated 2.0 years ago by 8.7k • written 2.0 years ago by ▴ 130
1
vote
1
reply
482
views
where can i find all TE elements GTF?
peakcalling RNAseq clipseq
updated 2.2 years ago by 54k • written 2.2 years ago by ▴ 130
0
votes
1
reply
553
views
Comment: Comment: Piranha peak calling waring message?
2.2 years ago by PK ▴ 130
0
votes
2
replies
553
views
Piranha peak calling waring message?
RNA-seq peak-calling piranha
updated 23 months ago by 43k • written 2.2 years ago by ▴ 130
0
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0
replies
571
views
Comment: Comment: How to subset peaks based on RNA sub class?
2.3 years ago by PK ▴ 130
0
votes
2
replies
571
views
How to subset peaks based on RNA sub class?
peakcalling RNAseq clipseq
2.3 years ago by PK ▴ 130
0
votes
0
replies
642
views
Comment: Comment: How to do the peak calling for introns?
2.3 years ago by PK ▴ 130
0
votes
2
replies
642
views
How to do the peak calling for introns?
RNAseq clipseq peakcalling
2.3 years ago by PK ▴ 130
0
votes
0
replies
430
views
How to analyse RNA-based protein pulldown mass spectrometry data
proteomics R maxquant limma
2.9 years ago by PK ▴ 130
0
votes
1
reply
802
views
How can i handle the multimapped reads?
assembly sequencing alignment
updated 2.9 years ago by • 0 • written 3.2 years ago by ▴ 130
1
vote
1
reply
478
views
Extract co-ordinate for iCLIP data?
sequencing linux RNA
updated 2.9 years ago by 100k • written 2.9 years ago by ▴ 130
0
votes
0
replies
3.5k
views
Comment: C: How to calculate per base coverage from the .bam file?
4.6 years ago by PK ▴ 130
5
votes
6
replies
3.5k
views
How to calculate per base coverage from the .bam file?
RNA-Seq next-gen R
updated 4.6 years ago by 82k • written 4.6 years ago by ▴ 130
0
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0
replies
3.5k
views
Comment: C: How to calculate per base coverage from the .bam file?
4.6 years ago by PK ▴ 130
0
votes
3
replies
1.4k
views
Export error WITH AGP?
software error genome next-gen alignment
updated 4.6 years ago by ▴ 280 • written 6.9 years ago by ▴ 130
0
votes
1
reply
3.5k
views
Comment: C: How to calculate per base coverage from the .bam file?
4.6 years ago by PK ▴ 130
0
votes
0
replies
669
views
how to define more stringent parameters for the snoscan to indentify snoRNA target on rRNA?
sequence rna-seq genome
4.8 years ago by PK ▴ 130
1
vote
3
replies
1.0k
views
How to extract un annotated (With abundant) small RNA transcript?
RNA-Seq sequencing Assembly
updated 5.3 years ago by 12k • written 5.3 years ago by ▴ 130
0
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0
replies
1.0k
views
Comment: C: How to extract un annotated (With abundant) small RNA transcript?
5.3 years ago by PK ▴ 130
17
votes
13
replies
15k
views
8 follow
duplicate 'row.names' are not allowed
RNA-Seq software error R
updated 5.3 years ago by ▴ 10 • written 5.9 years ago by ▴ 130
1
vote
2
replies
2.0k
views
multicuv error Could not find indexes
RNA-Seq alignment software error
updated 5.9 years ago by ★ 1.6k • written 5.9 years ago by ▴ 130
0
votes
2
replies
15k
views
Comment: C: duplicate 'row.names' are not allowed
5.9 years ago by PK ▴ 130
0
votes
0
replies
15k
views
Comment: C: duplicate 'row.names' are not allowed
5.9 years ago by PK ▴ 130
0
votes
0
replies
2.5k
views
Comment: C: how to find new transcript from bam file?
6.0 years ago by PK ▴ 130
0
votes
1
reply
5.0k
views
Comment: C: memory is low reading termination?
6.0 years ago by PK ▴ 130
0
votes
1
reply
5.0k
views
Comment: C: memory is low reading termination?
6.0 years ago by PK ▴ 130
2
votes
4
replies
5.0k
views
memory is low reading termination?
RNA-Seq alignment next-gen
updated 6.0 years ago by 142k • written 6.0 years ago by ▴ 130
0
votes
1
reply
2.5k
views
Comment: C: how to find new transcript from bam file?
6.0 years ago by PK ▴ 130
3
votes
6
replies
2.5k
views
how to find new transcript from bam file?
next-gen alignment RNA-Seq
updated 6.0 years ago by ▴ 730 • written 6.0 years ago by ▴ 130
1
vote
4
replies
1.5k
views
Any possible to run cuffdiff without cuffqunt?
RNA-Seq software error next-gen
updated 6.7 years ago by 20 • written 7.2 years ago by ▴ 130
0
votes
0
replies
1.4k
views
Comment: C: Export error WITH AGP?
6.9 years ago by PK ▴ 130
0
votes
1
reply
5.6k
views
Comment: C: How to import reference genome in CLC genomics workbench?
6.9 years ago by PK ▴ 130
0
votes
1
reply
5.6k
views
Comment: C: How to import reference genome in CLC genomics workbench?
6.9 years ago by PK ▴ 130
3
votes
8
replies
5.6k
views
How to import reference genome in CLC genomics workbench?
software error next-gen genome
updated 6.9 years ago by 5.8k • written 6.9 years ago by ▴ 130
0
votes
1
reply
5.6k
views
Comment: C: How to import reference genome in CLC genomics workbench?
6.9 years ago by PK ▴ 130
0
votes
1
reply
4.3k
views
Comment: C: error installing cummerbund in R studio
6.9 years ago by PK ▴ 130
0
votes
0
replies
4.3k
views
Comment: C: error installing cummerbund in R studio
6.9 years ago by PK ▴ 130
0
votes
1
reply
4.3k
views
Comment: C: error installing cummerbund in R studio
6.9 years ago by PK ▴ 130
0
votes
0
replies
1.9k
views
Comment: C: Installation error with funannotate?
6.9 years ago by PK ▴ 130
0
votes
0
replies
1.9k
views
Comment: C: Installation error with funannotate?
6.9 years ago by PK ▴ 130
0
votes
4
replies
1.9k
views
Installation error with funannotate?
RNA-Seq software error alignment next-gen
6.9 years ago by PK ▴ 130
0
votes
1
reply
2.3k
views
Comment: C: How to preform genome annotation?
6.9 years ago by PK ▴ 130
5
votes
8
replies
2.3k
views
How to preform genome annotation?
next-gen alignment genome
updated 6.9 years ago by ★ 1.5k • written 6.9 years ago by ▴ 130
0
votes
1
reply
3.0k
views
Comment: C: Genome assembly contig ordering
6.9 years ago by PK ▴ 130
0
votes
1
reply
2.3k
views
Comment: C: How to preform genome annotation?
6.9 years ago by PK ▴ 130
0
votes
0
replies
1.6k
views
How to specify frag len mean and frag len std dev while running cufflinks?
RNA-Seq software error next-gen
updated 7.1 years ago by 20 • written 7.3 years ago by ▴ 130
1
vote
1
reply
942
views
What is difference between default mode and with parameter mode in HTSeq?
RNA-Seq htseq ngs
7.1 years ago by PK ▴ 130
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