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Comment: C: How do you download the nt database for Kraken2?
4.6 years ago by DNAngel ▴ 260
0
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2
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11k
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Comment: C: How do you download the nt database for Kraken2?
4.6 years ago by DNAngel ▴ 260
0
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0
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1.4k
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Comment: C: What to do with mapped reads after assembly?
4.6 years ago by DNAngel ▴ 260
0
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2
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1.4k
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What to do with mapped reads after assembly?
Assembly annotation
4.6 years ago by DNAngel ▴ 260
0
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0
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2.3k
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Comment: C: Error when trying to convert BAM file to FASTQ.
4.6 years ago by DNAngel ▴ 260
0
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11
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2.3k
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Error when trying to convert BAM file to FASTQ.
samtools bedtools
4.6 years ago by DNAngel ▴ 260
0
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1
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2.3k
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Comment: C: Error when trying to sort unmapped reads in samtools.
4.6 years ago by DNAngel ▴ 260
0
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1
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2.3k
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Comment: C: Error when trying to sort unmapped reads in samtools.
4.6 years ago by DNAngel ▴ 260
0
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1
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2.3k
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Comment: C: Error when trying to sort unmapped reads in samtools.
4.6 years ago by DNAngel ▴ 260
0
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0
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2.3k
views
Comment: C: Error when trying to sort unmapped reads in samtools.
4.6 years ago by DNAngel ▴ 260
0
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0
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2.3k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
4.6 years ago by DNAngel ▴ 260
0
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1
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2.3k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
4.6 years ago by DNAngel ▴ 260
0
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6
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2.3k
views
FastQC Per sequence GC count always fails after trimmomatic?
fastqc trimmomatic
updated 4.6 years ago by 153k • written 4.6 years ago by ▴ 260
0
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0
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2.3k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
4.6 years ago by DNAngel ▴ 260
0
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2
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11k
views
Comment: C: How do you download the nt database for Kraken2?
4.7 years ago by DNAngel ▴ 260
2
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13
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11k
views
How do you download the nt database for Kraken2?
Kraken2 nt
updated 4.7 years ago by 153k • written 4.7 years ago by ▴ 260
0
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0
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1.4k
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
4.7 years ago by DNAngel ▴ 260
0
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0
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1.4k
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
4.7 years ago by DNAngel ▴ 260
0
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1
reply
1.4k
views
Comment: C: Papers/posts on best practises for dealing with Illumina reads?
4.7 years ago by DNAngel ▴ 260
0
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6
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1.4k
views
Papers/posts on best practises for dealing with Illumina reads?
assembly trimmomatic bwa-mem
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 260
0
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0
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828
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Comment: C: Determining if the number of significant results between two categories is signi
4.9 years ago by DNAngel ▴ 260
0
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2
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828
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Determining if the number of significant results between two categories is significantly different?
statistics
4.9 years ago by DNAngel ▴ 260
0
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0
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682
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How to know if it is missing a gene or assembly error?
BWA Assembly
updated 2.3 years ago by 45k • written 4.9 years ago by ▴ 260
0
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0
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756
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PAML sample size question and variation in results
PAML
4.9 years ago by DNAngel ▴ 260
0
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0
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1.3k
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Understanding PAML results between random-sites and clade model C.
PAML
5.0 years ago by DNAngel ▴ 260
2
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3
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2.4k
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How to parallelize bwa mem for single-end data within a larger bash script?
bash bwa-mem gnu-parallel
updated 5.9 years ago by 166k • written 5.9 years ago by ▴ 260
0
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0
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8.1k
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Comment: C: Optimize bwa mem in parallel on a SLURM cluster
5.9 years ago by DNAngel ▴ 260
0
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0
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2.4k
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Comment: C: How to parallelize bwa mem for single-end data within a larger bash script?
5.9 years ago by DNAngel ▴ 260
0
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0
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3.0k
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Comment: C: How do you extract longest transcript from fasta file using length and header ID
5.9 years ago by DNAngel ▴ 260
2
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2
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3.0k
views
How do you extract longest transcript from fasta file using length and header IDs?
awk fasta
updated 5.9 years ago by 13k • written 5.9 years ago by ▴ 260
0
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0
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14k
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Comment: C: Generate Consensus sequence from BAM file
5.9 years ago by DNAngel ▴ 260
2
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1
reply
2.0k
views
How to loop over a directory to set each file as a variable?
bash
5.9 years ago by DNAngel ▴ 260
1
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1
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2.3k
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Comment: C: Does Abyss work on single-end Illumina reads only?
5.9 years ago by DNAngel ▴ 260
0
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0
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2.3k
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Comment: C: Does Abyss work on single-end Illumina reads only?
5.9 years ago by DNAngel ▴ 260
0
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0
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2.0k
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Answer: A: How to get a VCF file for all variants in a specific gene and specific exon?
6.0 years ago by DNAngel ▴ 260
0
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0
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4.0k
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Comment: C: Split BAM into 1 BAM per contig
6.0 years ago by DNAngel ▴ 260
3
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7
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2.3k
views
Does Abyss work on single-end Illumina reads only?
Abyss
updated 6.0 years ago by 8.3k • written 6.0 years ago by ▴ 260
0
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0
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3.1k
views
Comment: C: How do you assemble contigs without using a reference genome?
6.0 years ago by DNAngel ▴ 260
0
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1
reply
3.1k
views
Comment: C: How do you assemble contigs without using a reference genome?
6.0 years ago by DNAngel ▴ 260
0
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1
reply
12k
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Comment: C: How to generate contigs from bam alignment
6.0 years ago by DNAngel ▴ 260
0
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1
reply
3.1k
views
Comment: C: How do you assemble contigs without using a reference genome?
6.0 years ago by DNAngel ▴ 260
4
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6
replies
3.1k
views
How do you assemble contigs without using a reference genome?
assembly genome
updated 6.0 years ago by 35k • written 6.0 years ago by ▴ 260
0
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0
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3.1k
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Comment: C: What do you do after obtaining sorted bam files?
6.0 years ago by DNAngel ▴ 260
0
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1
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3.1k
views
Comment: C: What do you do after obtaining sorted bam files?
6.0 years ago by DNAngel ▴ 260
1
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6
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3.1k
views
What do you do after obtaining sorted bam files?
bwa bam
updated 6.0 years ago by 15k • written 6.0 years ago by ▴ 260
0
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0
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3.1k
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Comment: C: What do you do after obtaining sorted bam files?
6.0 years ago by DNAngel ▴ 260
0
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1
reply
3.5k
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Comment: C: gene annotation using BAM files
6.0 years ago by DNAngel ▴ 260
0
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0
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11k
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Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
6.0 years ago by DNAngel ▴ 260
1
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0
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5.3k
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Answer: A: how to extract coding sequences (CDS) from a bam file or vcf file ?
6.0 years ago by DNAngel ▴ 260
0
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0
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5.3k
views
Comment: C: how to extract coding sequences (CDS) from a bam file or vcf file ?
6.0 years ago by DNAngel ▴ 260
203 results • Page 3 of 5
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