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Dunn Index for Clusters from scRNA-Seq
scRNA-Seq clustering dunn index scater scran
5.2 years ago by hkarakurt ▴ 180
0
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0
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3.3k
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Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
5.2 years ago by hkarakurt ▴ 180
0
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1
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3.3k
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Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
5.2 years ago by hkarakurt ▴ 180
5
votes
7
replies
3.3k
views
Differential Expression Analysis between conditions of single cell RNA-Seq
scRNA-Seq RNA-Seq differential expression analysis
5.2 years ago by hkarakurt ▴ 180
0
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1
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3.3k
views
Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
5.2 years ago by hkarakurt ▴ 180
14
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1
reply
9.7k
views
Mitochondrial Gene percentage threshold in single cell RNA-Seq
RNA-Seq scRNA-Seq mitochondrial genes
5.2 years ago by hkarakurt ▴ 180
1
vote
3
replies
1.4k
views
Enrichment Analysis with only GeneSymbols
RNA-Seq enrichment R scRNA-Seq
updated 5.2 years ago by ★ 1.9k • written 5.2 years ago by ▴ 180
0
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0
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1.4k
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Comment: C: Enrichment Analysis with only GeneSymbols
5.2 years ago by hkarakurt ▴ 180
0
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1
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5.7k
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Comment: C: How to increase point size or color palette of a PCA plot using the scater packa
5.2 years ago by hkarakurt ▴ 180
0
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0
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2.4k
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Comment: C: Silhouette Plots for Clustering Quality (Multiple Algorithm)
5.2 years ago by hkarakurt ▴ 180
0
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1
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2.4k
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Comment: C: Silhouette Plots for Clustering Quality (Multiple Algorithm)
5.2 years ago by hkarakurt ▴ 180
2
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4
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2.4k
views
Silhouette Plots for Clustering Quality (Multiple Algorithm)
R Clustering RNA-Seq scRNA-Seq
5.2 years ago by hkarakurt ▴ 180
0
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1
reply
1.3k
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newSCESet and SingleCellExperiment basic differences and TMM Normalization
RNA-Seq single-cell R
5.6 years ago by hkarakurt ▴ 180
0
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2
replies
1.1k
views
Enrichment Tool for Mouse miRNAs
miRNA enrichment GO Analysis
5.8 years ago by hkarakurt ▴ 180
0
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1
reply
1.4k
views
Annotation File for Enchancer Regions in Ensembl mm10 genome
ChIP-Seq enhancer
5.8 years ago by hkarakurt ▴ 180
5
votes
2
replies
5.3k
views
Hisat2 or Bowtie2 for ChIP-Seq Data?
ChIP-Seq sequencing alignment
updated 5.9 years ago by 7.5k • written 5.9 years ago by ▴ 180
7
votes
7
replies
4.4k
views
Genes with promoter and enhancer regions as GTF
ChIP-Seq featurecounts gtf promoter genes
updated 7 months ago by • 0 • written 5.9 years ago by ▴ 180
0
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1
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4.4k
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Answer: A: Genes with promoter and enhancer regions as GTF
5.9 years ago by hkarakurt ▴ 180
4
votes
5
replies
4.5k
views
Differential ChIP-Seq Analysis
ChIP-Seq R next-gen alignment
updated 6.0 years ago by 13k • written 6.0 years ago by ▴ 180
0
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0
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3.0k
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Comment: C: How to extrach gene names and peaks from BedGraph or BigWig files
6.0 years ago by hkarakurt ▴ 180
0
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2
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3.0k
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Comment: C: How to extrach gene names and peaks from BedGraph or BigWig files
6.0 years ago by hkarakurt ▴ 180
1
vote
5
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3.0k
views
How to extrach gene names and peaks from BedGraph or BigWig files
ChIP-Seq bedgraph bigwig peak
updated 6.0 years ago by 104k • written 6.0 years ago by ▴ 180
0
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0
replies
2.1k
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Comment: C: Where to download Protein-Protein Interaction Network with Cost values (Or Calcu
6.1 years ago by hkarakurt ▴ 180
0
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1
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2.1k
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Comment: C: Where to download Protein-Protein Interaction Network with Cost values (Or Calcu
6.1 years ago by hkarakurt ▴ 180
0
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4
replies
2.1k
views
Where to download Protein-Protein Interaction Network with Cost values (Or Calculate)?
String PPI Network
6.1 years ago by hkarakurt ▴ 180
1
vote
2
replies
3.1k
views
Differential Coexpression Analysis
coexpression microarray RNA-Seq network
6.2 years ago by hkarakurt ▴ 180
0
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0
replies
2.1k
views
Comment: C: Deseq2 results have too many genes
6.2 years ago by hkarakurt ▴ 180
0
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0
replies
2.1k
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Comment: C: Deseq2 results have too many genes
6.2 years ago by hkarakurt ▴ 180
0
votes
4
replies
2.1k
views
Deseq2 results have too many genes
Deseq2 RNA-Seq Differential Expression
updated 6.2 years ago by ▴ 340 • written 6.2 years ago by ▴ 180
2
votes
1
reply
1.5k
views
Example data to verify of RNA-Seq Analysis pipeline
hisat2 RNA-Seq pipeline
updated 13 months ago by 43k • written 6.3 years ago by ▴ 180
2
votes
1
reply
2.0k
views
Cufflinks gives only CUFF names with a gtf.
cufflinks RNA-Seq hisat2
updated 6.3 years ago by ★ 3.6k • written 6.3 years ago by ▴ 180
0
votes
1
reply
1.2k
views
Particle swarm or Ant Colony optimization of genome-scale metabolic model in Matlab
Matlab Optimization Metabolic Model
6.3 years ago by hkarakurt ▴ 180
0
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2
replies
1.4k
views
Significantly changed genes increase after Benjamini Hochberg correction
microarray matlab ttest fdr
6.4 years ago by hkarakurt ▴ 180
1
vote
1
reply
2.5k
views
Expression data extraction error. Logical result as expression matrix
geoquery bioconductor gse
updated 6.5 years ago by 26k • written 7.0 years ago by ▴ 180
0
votes
1
reply
11k
views
Comment: C: Retrieving data from NCBI GEO and RNA-Seq Data Analysis
6.7 years ago by hkarakurt ▴ 180
3
votes
6
replies
11k
views
Retrieving data from NCBI GEO and RNA-Seq Data Analysis
RNA-Seq R GEO Normalization Count
updated 7 months ago by ▴ 310 • written 6.7 years ago by ▴ 180
3
votes
2
replies
4.8k
views
Tool for predicting transcription factors from a gene list
transcription-factors gene
updated 11 months ago by 43k • written 7.0 years ago by ▴ 180
1
vote
1
reply
5.5k
views
How to extract expression data from RAW data.
raw expression
updated 7.0 years ago by 35k • written 7.0 years ago by ▴ 180
0
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1
reply
3.5k
views
Comment: C: Expression data preprocess and normalization
7.0 years ago by hkarakurt ▴ 180
0
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1
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3.5k
views
Comment: C: Expression data preprocess and normalization
7.0 years ago by hkarakurt ▴ 180
1
vote
5
replies
3.5k
views
Expression data preprocess and normalization
RNA-Seq Bioconductor R GEO GSE
7.0 years ago by hkarakurt ▴ 180
91 results • Page 2 of 2
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