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1
vote
0
replies
306
views
CNV Analysis for single bulk RNA-Seq Sample
CNV RNA-Seq
updated 10 months ago by 45k • written 10 months ago by ▴ 200
1
vote
2
replies
1.5k
views
Nextflow crash on AWS Batch with transition error
BWA Nextflow AWS
updated 18 months ago by ★ 2.4k • written 18 months ago by ▴ 200
0
votes
0
replies
1.1k
views
Comment: Comment: CNV-calling single sample
20 months ago by hkarakurt ▴ 200
0
votes
1
reply
1.0k
views
Comment: Comment: Transcript Based Annotation of Variants Using Annovar
20 months ago by hkarakurt ▴ 200
3
votes
4
replies
1.0k
views
Transcript Based Annotation of Variants Using Annovar
Annovar SNV Transcript Variant
updated 20 months ago by ★ 3.1k • written 20 months ago by ▴ 200
0
votes
0
replies
1.4k
views
Comment: Comment: 4 Fastq files for a single run generated by 10X
21 months ago by hkarakurt ▴ 200
2
votes
2
replies
1.4k
views
4 Fastq files for a single run generated by 10X
scRNA-Seq Fastq SRA 10X
21 months ago by hkarakurt ▴ 200
0
votes
2
replies
816
views
Finding the Sequence of a Protein with Variant
WES Variant-Annotation WGS
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 200
4
votes
6
replies
2.7k
views
Using Specific Regions of Genome as Reference for Alignment Using STAR
RNA-Seq Alignment STAR
updated 2.8 years ago by ★ 2.4k • written 2.9 years ago by ▴ 200
0
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0
replies
2.7k
views
Comment: Comment: Using Specific Regions of Genome as Reference for Alignment Using STAR
2.9 years ago by hkarakurt ▴ 200
2
votes
2
replies
1.4k
views
Weighted gene regulatory networks
regulatory ChIP-Seq network
updated 2.9 years ago by ▴ 610 • written 5.2 years ago by ▴ 200
2
votes
1
reply
836
views
A method to find if a variant is Genomic or an RNA-Editing variant
Editing RNA-Seq WES RNA Variant
updated 3.1 years ago by 22k • written 3.1 years ago by ▴ 200
0
votes
0
replies
929
views
Inserting Junctions Into Genome after Indexing with STAR
splicing alternative Junctions STAR RNA-Seq
3.3 years ago by hkarakurt ▴ 200
0
votes
0
replies
3.5k
views
Comment: Comment: Using DESeq2 as one sample vs. population
3.3 years ago by hkarakurt ▴ 200
0
votes
0
replies
3.5k
views
Comment: Comment: Using DESeq2 as one sample vs. population
3.3 years ago by hkarakurt ▴ 200
0
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1
reply
3.5k
views
Comment: Comment: Using DESeq2 as one sample vs. population
3.3 years ago by hkarakurt ▴ 200
0
votes
1
reply
3.5k
views
Comment: Comment: Using DESeq2 as one sample vs. population
3.3 years ago by hkarakurt ▴ 200
5
votes
8
replies
3.5k
views
Using DESeq2 as one sample vs. population
expression differential test DESeq2 RNA-Seq one-sample
3.3 years ago by hkarakurt ▴ 200
0
votes
0
replies
1.1k
views
Comment: Comment: Formula for Differential Expression Analysis of 2 conditions and 2 cell types
3.5 years ago by hkarakurt ▴ 200
5
votes
2
replies
1.1k
views
Formula for Differential Expression Analysis of 2 conditions and 2 cell types
Differential edgeR Expression Formula RNA-Seq
3.5 years ago by hkarakurt ▴ 200
0
votes
0
replies
635
views
Prediction Tool for Pathogenicity of Alternatively Spliced Proteins
protein mRNA RNA-Seq splicing
3.7 years ago by hkarakurt ▴ 200
0
votes
0
replies
3.6k
views
Comment: Comment: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
3.9 years ago by hkarakurt ▴ 200
8
votes
5
replies
3.6k
views
Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
Variant Calling SNP MinION ONT
3.9 years ago by hkarakurt ▴ 200
0
votes
0
replies
3.6k
views
Comment: Comment: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
3.9 years ago by hkarakurt ▴ 200
2
votes
1
reply
4.1k
views
MinION Data Examples (FAST5) Database
ONT FAST5 MinION DNA
updated 4.1 years ago by 153k • written 4.1 years ago by ▴ 200
3
votes
1
reply
3.5k
views
Normalization and Batch Effect of bulk RNA-Seq
batch RNA-Seq correction normalization
updated 4.2 years ago by 15k • written 4.2 years ago by ▴ 200
0
votes
1
reply
1.2k
views
Multiple Transctipr ID (NM ) from MyVariantInfo
snp transcript dna-seq
updated 4.4 years ago by ▴ 720 • written 4.4 years ago by ▴ 200
1
vote
1
reply
901
views
Genomic Variant calling from RNA-Seq Data
RNA-Seq SNP Genomic Variant
updated 4.6 years ago by 89k • written 4.6 years ago by ▴ 200
30
votes
15
replies
24k
views
8 follow
Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
RNA-Seq R Seurat Monocle Pseudotime
updated 4.6 years ago by ▴ 120 • written 6.2 years ago by ▴ 200
0
votes
1
reply
1.6k
views
Comment: C: Optimal Number of SNPs in NA12878 WES Data
4.7 years ago by hkarakurt ▴ 200
0
votes
3
replies
1.6k
views
Optimal Number of SNPs in NA12878 WES Data
WES GATK SNP
4.8 years ago by hkarakurt ▴ 200
4
votes
3
replies
2.5k
views
Calculating GC content around a specific genomic location
WGS WES GC genome SNP
updated 4.8 years ago by 4.2k • written 4.8 years ago by ▴ 200
0
votes
0
replies
936
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
RNA-Seq scRNA-Seq batch-effect
updated 17 months ago by 45k • written 4.8 years ago by ▴ 200
2
votes
1
reply
1.4k
views
Trimmomatic trims most of the reverse strand
fastq trim trimmomatic bwa
updated 4.9 years ago by 153k • written 4.9 years ago by ▴ 200
0
votes
0
replies
1.5k
views
Comment: C: SNPs on a single transcript of a gene with multiple transcripts
5.1 years ago by hkarakurt ▴ 200
3
votes
3
replies
1.5k
views
SNPs on a single transcript of a gene with multiple transcripts
WGS WES SNP Gene
updated 5.1 years ago by ★ 1.9k • written 5.1 years ago by ▴ 200
0
votes
1
reply
1.8k
views
Comment: C: Network Analysis of Each Cluster of Protein Interaction Network
5.2 years ago by hkarakurt ▴ 200
0
votes
0
replies
1.8k
views
Comment: C: Network Analysis of Each Cluster of Protein Interaction Network
5.2 years ago by hkarakurt ▴ 200
4
votes
5
replies
1.8k
views
Network Analysis of Each Cluster of Protein Interaction Network
R Python Network PPI
updated 5.2 years ago by ▴ 540 • written 5.2 years ago by ▴ 200
0
votes
0
replies
3.4k
views
Comment: C: Differential Expression Analysis of Two Groups Time Series Data with Limma
5.9 years ago by hkarakurt ▴ 200
1
vote
2
replies
3.4k
views
Differential Expression Analysis of Two Groups Time Series Data with Limma
limma microarray differential expression RNA-Seq
5.9 years ago by hkarakurt ▴ 200
0
votes
1
reply
5.3k
views
Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
6.0 years ago by hkarakurt ▴ 200
0
votes
1
reply
5.3k
views
Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
6.0 years ago by hkarakurt ▴ 200
0
votes
1
reply
5.3k
views
Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
6.0 years ago by hkarakurt ▴ 200
3
votes
8
replies
5.3k
views
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
fpkm scRNA-seq RNA-Seq tpm batch-effect
updated 17 months ago by 45k • written 6.0 years ago by ▴ 200
2
votes
1
reply
1.9k
views
Automatic Coloring for Each Node According to Names in Cytoscape
cytoscape network intercation
updated 6.2 years ago by ▴ 650 • written 6.2 years ago by ▴ 200
0
votes
1
reply
24k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
6.2 years ago by hkarakurt ▴ 200
0
votes
0
replies
24k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
6.2 years ago by hkarakurt ▴ 200
0
votes
1
reply
24k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
6.2 years ago by hkarakurt ▴ 200
0
votes
0
replies
2.6k
views
Comment: C: Dunn Index for Clusters from scRNA-Seq
6.5 years ago by hkarakurt ▴ 200
92 results • Page 1 of 2
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